Variant report

Variant	rs73359947
Chromosome Location	chr14:103829571-103829572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:103809313..103813484-chr14:103825579..103830038,5	K562	blood:
2	chr14:103799180..103801732-chr14:103827433..103831794,4	MCF-7	breast:
3	chr14:103828213..103830323-chr14:103850141..103852816,2	MCF-7	breast:
4	chr14:103798482..103804625-chr14:103825700..103830571,9	K562	blood:

Variant related genes	Relation type
ENSG00000100664	Chromatin interaction
ENSG00000272533	Chromatin interaction
ENSG00000075413	Chromatin interaction
ENSG00000259775	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10132290	1.00[AMR][1000 genomes]
rs10133386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135716	1.00[AMR][1000 genomes]
rs10138651	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138842	1.00[AMR][1000 genomes]
rs10141919	1.00[AMR][1000 genomes]
rs10145990	1.00[AMR][1000 genomes]
rs10146864	1.00[AMR][1000 genomes]
rs10147675	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148672	1.00[AMR][1000 genomes]
rs10151314	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379294	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379421	1.00[AMR][1000 genomes]
rs28631776	1.00[AMR][1000 genomes]
rs35273920	1.00[AMR][1000 genomes]
rs35586956	1.00[AMR][1000 genomes]
rs56134485	1.00[AMR][1000 genomes]
rs56305318	1.00[AMR][1000 genomes]
rs59330484	1.00[AMR][1000 genomes]
rs59988848	1.00[AMR][1000 genomes]
rs60236703	1.00[AMR][1000 genomes]
rs61651942	1.00[AMR][1000 genomes]
rs73353049	1.00[AMR][1000 genomes]
rs73359944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8022746	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042714	chr14:103085298-103860730	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1049747	chr14:103126148-103955984	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
3	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
4	nsv9168	chr14:103531729-103913306	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103828400-103838600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr14:103828600-103831000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr14:103828600-103834200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:103829200-103829800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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