Variant report

Variant	rs1014779
Chromosome Location	chr6:33276466-33276467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33259755..33275794-chr6:33276314..33291745,68	MCF-7	breast:
2	chr6:33245252..33247528-chr6:33275274..33277849,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237441	Chromatin interaction
ENSG00000235863	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1061783	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1800838	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013891	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2071888	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2071889	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2395379	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2894334	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3106190	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3106195	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3130016	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3130018	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3130099	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3130100	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3130101	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3130262	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3130263	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3130264	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3130265	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3130266	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3130267	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3130269	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3130270	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3130271	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3135405	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3135407	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3135408	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3135409	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs446735	0.85[EUR][1000 genomes]
rs456261	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs463260	0.85[EUR][1000 genomes]
rs464865	0.85[EUR][1000 genomes]
rs469064	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9277968	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1014779	TAPBP	cis	Artery Tibial	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33268200-33279400	Strong transcription	Fetal Intestine Small	intestine
2	chr6:33268200-33279600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:33268200-33279800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:33268200-33279800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:33268200-33279800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:33268200-33279800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:33268200-33279800	Weak transcription	Right Atrium	heart
8	chr6:33268200-33279800	Weak transcription	HSMMtube	muscle
9	chr6:33268400-33279600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:33268400-33279800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:33268600-33279600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:33268600-33279800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:33268600-33279800	Weak transcription	HSMM	muscle
14	chr6:33268800-33279400	Strong transcription	Fetal Thymus	thymus
15	chr6:33268800-33279600	Weak transcription	NH-A	brain
16	chr6:33269000-33279800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:33269000-33279800	Weak transcription	Fetal Heart	heart
18	chr6:33269000-33279800	Strong transcription	Fetal Stomach	stomach
19	chr6:33269200-33279000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr6:33269200-33279400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:33269200-33279600	Weak transcription	Fetal Brain Male	brain
22	chr6:33269400-33279200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:33269600-33278400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:33269600-33279400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:33269800-33279200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:33269800-33279400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:33270000-33279800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:33271400-33277000	Strong transcription	Primary T cells from cord blood	blood
29	chr6:33271600-33279400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:33271800-33279600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:33272200-33277000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:33272200-33279600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:33272200-33279800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:33272400-33276800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
35	chr6:33272600-33279600	Weak transcription	Fetal Lung	lung
36	chr6:33272600-33280000	Weak transcription	Brain Germinal Matrix	brain
37	chr6:33272800-33279600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:33272800-33279600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:33272800-33279800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:33273000-33279600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:33273000-33279600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr6:33273000-33279800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:33273000-33279800	Weak transcription	HUVEC	blood vessel
44	chr6:33273000-33280000	Weak transcription	Fetal Brain Female	brain
45	chr6:33273000-33280000	Weak transcription	Psoas Muscle	Psoas
46	chr6:33273200-33279200	Weak transcription	Small Intestine	intestine
47	chr6:33273200-33280000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:33273200-33280200	Weak transcription	Aorta	Aorta
49	chr6:33273400-33276600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:33273400-33278800	Weak transcription	Colon Smooth Muscle	Colon

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