Variant report

Variant	rs3130269
Chromosome Location	chr6:33308130-33308131
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33246615..33248643-chr6:33307111..33310080,2	K562	blood:
2	chr6:33306953..33310348-chr6:33311762..33315181,4	K562	blood:
3	chr6:33282271..33285948-chr6:33307120..33310274,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236104	Chromatin interaction
ENSG00000227057	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1014779	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1061783	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1800838	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2013891	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2071888	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2071889	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2395379	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2894334	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3106190	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3106195	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3130014	0.89[ASN][1000 genomes]
rs3130016	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3130018	0.87[EUR][1000 genomes]
rs3130099	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3130100	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3130101	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3130102	0.87[EUR][1000 genomes]
rs3130262	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3130263	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3130264	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3130265	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3130266	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3130267	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3130270	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3130271	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3135405	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3135407	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3135408	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3135409	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs446735	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs456261	0.84[EUR][1000 genomes]
rs463260	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs464865	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs469064	0.81[EUR][1000 genomes]
rs9277968	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
3	nsv969386	chr6:33297665-33325116	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33291800-33317400	Weak transcription	Right Atrium	heart
2	chr6:33300400-33309800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:33303000-33308800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:33304400-33308200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:33304400-33308400	Weak transcription	Primary B cells from cord blood	blood
6	chr6:33304400-33311200	Weak transcription	GM12878-XiMat	blood
7	chr6:33307200-33312200	Weak transcription	K562	blood

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