Variant report

Variant	rs10148050
Chromosome Location	chr14:71155984-71155985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10129386	0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10133031	0.82[ASN][1000 genomes]
rs10133103	0.90[ASN][1000 genomes]
rs11846722	0.91[ASN][1000 genomes]
rs11846724	0.91[ASN][1000 genomes]
rs12232205	0.94[ASN][1000 genomes]
rs17108384	0.87[AMR][1000 genomes]
rs28509237	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4899366	0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs58483706	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7144585	0.91[AMR][1000 genomes]
rs8009821	0.81[ASN][1000 genomes]
rs8009998	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527969	chr14:71150421-71155984	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10148050	ADAM21	cis	parietal	SCAN
rs10148050	ZFYVE26	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71133200-71173000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:71134600-71158600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:71141000-71160800	Weak transcription	Primary T cells from cord blood	blood
4	chr14:71143000-71177800	Weak transcription	Primary B cells from cord blood	blood
5	chr14:71153200-71157000	Weak transcription	Brain Germinal Matrix	brain
6	chr14:71153400-71165200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:71154000-71156800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:71154400-71156800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:71154400-71165000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:71154600-71156800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr14:71154600-71156800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:71154600-71159000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:71154600-71165000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr14:71154600-71165200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr14:71155400-71156200	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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