Variant report

Variant	rs10148564
Chromosome Location	chr14:84719344-84719345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10133327	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17119849	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323743	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902160	chr14:84694867-84730585	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv902161	chr14:84699866-84769903	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84716000-84720600	Enhancers	HUVEC	blood vessel
2	chr14:84716800-84720400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:84717400-84719600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:84717600-84720600	Weak transcription	Fetal Kidney	kidney
5	chr14:84717600-84722400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:84718400-84719800	Enhancers	Fetal Stomach	stomach
7	chr14:84718600-84719400	Enhancers	Adipose Nuclei	Adipose
8	chr14:84718600-84719600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:84718600-84720000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:84718600-84720600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:84718800-84719600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:84719200-84719400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr14:84719200-84719800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:84719200-84722000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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