Variant report

Variant	rs10148566
Chromosome Location	chr14:22175621-22175622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10132760	0.81[CEU][hapmap]
rs10151114	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1018344	0.85[CEU][hapmap]
rs12431503	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs12589185	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12589513	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs12589962	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12894518	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17182761	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1997531	0.89[CEU][hapmap]
rs1997532	0.80[CEU][hapmap]
rs1997533	0.81[CEU][hapmap]
rs2319874	0.99[ASN][1000 genomes]
rs2319875	0.99[ASN][1000 genomes]
rs28575550	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4513011	0.93[ASN][1000 genomes]
rs4528483	0.82[ASN][1000 genomes]
rs4628878	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4982486	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs4982487	0.89[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs55654479	0.99[ASN][1000 genomes]
rs59305233	0.85[EUR][1000 genomes]
rs6650488	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs7143695	0.90[CEU][hapmap]
rs7148008	0.82[JPT][hapmap]
rs7158141	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72688056	0.83[EUR][1000 genomes]
rs8003447	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs8011341	0.90[CEU][hapmap]
rs8011509	0.81[CEU][hapmap]
rs8011979	0.81[CEU][hapmap]
rs8013476	0.84[CEU][hapmap]
rs8016911	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8018604	0.81[CEU][hapmap]
rs8019537	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs8020038	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs8020165	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs8022425	0.90[CEU][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
2	nsv456147	chr14:22073473-22305071	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv563851	chr14:22073473-22305071	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv510629	chr14:22134425-22215842	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:22172600-22180600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links