Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr14:22190703-22191098	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
TRAV3	TF binding region

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10132760	0.95[CEU][hapmap]
rs10148566	0.85[CEU][hapmap]
rs10151114	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1018345	0.95[CEU][hapmap]
rs12589185	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12589962	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs12894518	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17182761	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1997531	0.84[CEU][hapmap]
rs1997532	0.95[CEU][hapmap]
rs1997533	0.95[CEU][hapmap]
rs28575550	1.00[CEU][hapmap]
rs4513011	0.92[EUR][1000 genomes]
rs4528483	0.92[EUR][1000 genomes]
rs4628878	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61974826	0.83[ASN][1000 genomes]
rs7143695	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs7150049	0.95[CEU][hapmap];0.82[CHB][hapmap]
rs7158141	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8003447	0.89[CEU][hapmap]
rs8011341	0.85[CEU][hapmap]
rs8011509	0.95[CEU][hapmap]
rs8011979	0.95[CEU][hapmap]
rs8013476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016911	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8018604	0.95[CEU][hapmap]
rs8019537	0.89[CEU][hapmap]
rs8020165	0.85[CEU][hapmap]
rs8022088	0.94[CEU][hapmap]
rs8022425	0.95[CEU][hapmap]
rs926027	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
2	nsv456147	chr14:22073473-22305071	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv563851	chr14:22073473-22305071	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv510629	chr14:22134425-22215842	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:22188400-22209600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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