Variant report

Variant	rs10148749
Chromosome Location	chr14:81536799-81536800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10129380	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10133458	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10136213	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10141582	0.96[EUR][1000 genomes]
rs10141777	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10142959	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10142999	0.93[EUR][1000 genomes]
rs10143087	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10146192	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10146203	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10147011	0.96[EUR][1000 genomes]
rs10147921	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10149739	0.96[EUR][1000 genomes]
rs10149740	0.96[EUR][1000 genomes]
rs10149807	0.96[EUR][1000 genomes]
rs10149992	0.96[EUR][1000 genomes]
rs10151660	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845164	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17111431	0.97[EUR][1000 genomes]
rs17111471	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2075173	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2075174	0.96[EUR][1000 genomes]
rs2075175	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2075176	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2075177	0.96[EUR][1000 genomes]
rs2075178	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2075179	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2241119	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2241120	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2284733	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2300527	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300528	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300529	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2300530	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2300531	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2300532	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2300533	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2300535	0.86[EUR][1000 genomes]
rs28417017	0.96[EUR][1000 genomes]
rs28599787	0.93[EUR][1000 genomes]
rs28654442	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60447919	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61978750	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574622	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574625	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7143259	0.94[EUR][1000 genomes]
rs7143593	0.92[EUR][1000 genomes]
rs7144998	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7145101	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145290	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145351	0.93[EUR][1000 genomes]
rs7150193	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7151543	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7158747	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7159477	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7160204	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7161244	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019570	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81522600-81545600	Weak transcription	Thymus	Thymus
2	chr14:81534600-81539000	ZNF genes & repeats	Dnd41	blood
3	chr14:81536600-81537000	ZNF genes & repeats	Fetal Thymus	thymus

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