Variant report

Variant	rs2300527
Chromosome Location	chr14:81550888-81550889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10129380	0.80[EUR][1000 genomes]
rs10136213	0.80[EUR][1000 genomes]
rs10141582	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10141777	0.80[EUR][1000 genomes]
rs10146192	0.80[EUR][1000 genomes]
rs10146203	0.80[EUR][1000 genomes]
rs10147011	0.81[EUR][1000 genomes]
rs10148749	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10149739	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10149740	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10149807	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10149992	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10151660	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11845164	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17111431	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2075173	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2075174	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2075175	0.80[EUR][1000 genomes]
rs2075176	0.80[EUR][1000 genomes]
rs2075177	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2241119	0.80[EUR][1000 genomes]
rs2241120	0.80[EUR][1000 genomes]
rs2284733	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2300528	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300529	0.80[EUR][1000 genomes]
rs2300530	0.80[EUR][1000 genomes]
rs2300531	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs2300532	0.80[EUR][1000 genomes]
rs2300533	0.80[EUR][1000 genomes]
rs28417017	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28599787	0.80[AMR][1000 genomes]
rs28654442	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60447919	0.80[EUR][1000 genomes]
rs61978750	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574622	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574625	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143914	0.85[AFR][1000 genomes]
rs7145101	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145290	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7150193	0.80[EUR][1000 genomes]
rs7151543	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158747	0.80[EUR][1000 genomes]
rs7159477	0.80[EUR][1000 genomes]
rs7160204	0.80[EUR][1000 genomes]
rs7161244	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8017455	0.89[MKK][hapmap];0.89[YRI][hapmap]
rs8019570	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1038949	chr14:81543590-81579896	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81537000-81554200	Weak transcription	Fetal Thymus	thymus
2	chr14:81538200-81593000	Weak transcription	Psoas Muscle	Psoas
3	chr14:81545800-81551000	Weak transcription	Dnd41	blood
4	chr14:81547000-81552400	Weak transcription	Liver	Liver
5	chr14:81549000-81552000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:81549000-81572400	Weak transcription	Left Ventricle	heart
7	chr14:81550600-81561000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr14:81550800-81551400	Enhancers	Brain Germinal Matrix	brain
9	chr14:81550800-81551800	Strong transcription	Thymus	Thymus

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