Variant report
| Variant | rs10149190 |
|---|---|
| Chromosome Location | chr14:106010995-106010996 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:105886128..105888300-chr14:106009071..106011499,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000182979 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10138105 | 0.89[AMR][1000 genomes] |
| rs12232113 | 0.89[AMR][1000 genomes] |
| rs28385363 | 0.89[AMR][1000 genomes] |
| rs28385498 | 0.89[AMR][1000 genomes] |
| rs28700121 | 0.89[AMR][1000 genomes] |
| rs28785039 | 0.94[AMR][1000 genomes] |
| rs28785198 | 0.94[AMR][1000 genomes] |
| rs28807390 | 0.84[AMR][1000 genomes] |
| rs28837201 | 0.94[AMR][1000 genomes] |
| rs28888427 | 0.94[AMR][1000 genomes] |
| rs61112526 | 0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74091228 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530813 | chr14:105607701-106453697 | Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 149 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
