Variant report

Variant	rs10149307
Chromosome Location	chr14:33060147-33060148
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10149417	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1956211	0.90[JPT][hapmap]
rs57735287	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6571538	0.81[JPT][hapmap]
rs6571539	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146855	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs872925	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
2	chr14:33046000-33063000	Weak transcription	Ovary	ovary
3	chr14:33046600-33061800	Weak transcription	Fetal Heart	heart
4	chr14:33057000-33060400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:33057000-33062000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:33057800-33078200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:33058200-33060600	Enhancers	Psoas Muscle	Psoas
8	chr14:33058200-33067400	Enhancers	NHDF-Ad	bronchial
9	chr14:33058400-33062000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:33058600-33060600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:33058600-33061600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:33058600-33061600	Weak transcription	Left Ventricle	heart
13	chr14:33058600-33062200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:33058600-33063800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:33058600-33063800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr14:33058800-33061200	Weak transcription	HSMMtube	muscle
17	chr14:33059200-33062000	Weak transcription	Right Ventricle	heart
18	chr14:33059200-33062400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:33059200-33063600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr14:33059400-33064600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr14:33059400-33072000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:33059600-33061600	Weak transcription	Brain Substantia Nigra	brain
23	chr14:33059600-33062000	Weak transcription	NHLF	lung
24	chr14:33059600-33063000	Weak transcription	Right Atrium	heart
25	chr14:33059800-33061000	Enhancers	Brain Cingulate Gyrus	brain
26	chr14:33059800-33061600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr14:33059800-33062200	Weak transcription	Brain Anterior Caudate	brain
28	chr14:33060000-33060600	Enhancers	Fetal Muscle Leg	muscle

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