Variant report

Variant	rs6571538
Chromosome Location	chr14:33039833-33039834
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10145392	0.85[ASN][1000 genomes]
rs10149307	0.81[JPT][hapmap]
rs10149417	0.81[JPT][hapmap]
rs1956211	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs28517784	0.85[ASN][1000 genomes]
rs8017259	0.86[ASN][1000 genomes]
rs9322904	0.85[ASN][1000 genomes]
rs9322905	0.93[ASN][1000 genomes]
rs9322906	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33028600-33041200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:33028800-33041000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:33034400-33040800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
5	chr14:33034800-33042000	Weak transcription	Left Ventricle	heart
6	chr14:33035000-33045600	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:33035000-33045600	Weak transcription	HSMMtube	muscle
8	chr14:33035200-33041200	Weak transcription	Right Ventricle	heart
9	chr14:33035200-33041200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
11	chr14:33037000-33045600	Weak transcription	Brain Angular Gyrus	brain
12	chr14:33037200-33040600	Weak transcription	Fetal Intestine Large	intestine
13	chr14:33037200-33041000	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:33037200-33041800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:33037200-33042000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:33037200-33042200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:33037400-33040800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:33037400-33040800	Weak transcription	Fetal Intestine Small	intestine
19	chr14:33037400-33041000	Weak transcription	Fetal Heart	heart
20	chr14:33037400-33041200	Weak transcription	Brain Substantia Nigra	brain
21	chr14:33037400-33041200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr14:33037400-33041600	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:33037400-33041600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr14:33037600-33041600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:33037600-33045600	Weak transcription	Brain Anterior Caudate	brain
26	chr14:33038000-33041200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr14:33039800-33040800	Enhancers	Liver	Liver

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