Variant report

Variant	rs8017259
Chromosome Location	chr14:33042864-33042865
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33040924..33044247-chr14:33045114..33047639,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10145392	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1956211	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28517784	0.84[EUR][1000 genomes]
rs6571538	0.86[ASN][1000 genomes]
rs8016916	0.83[EUR][1000 genomes]
rs9322904	0.81[ASN][1000 genomes]
rs9322905	0.86[ASN][1000 genomes]
rs9322906	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
2	chr14:33035000-33045600	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:33035000-33045600	Weak transcription	HSMMtube	muscle
4	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
5	chr14:33037000-33045600	Weak transcription	Brain Angular Gyrus	brain
6	chr14:33037600-33045600	Weak transcription	Brain Anterior Caudate	brain
7	chr14:33041000-33045800	Weak transcription	Brain Germinal Matrix	brain
8	chr14:33041600-33043200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:33042200-33045000	Weak transcription	Brain Substantia Nigra	brain
10	chr14:33042200-33045600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:33042200-33045600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:33042400-33043600	Enhancers	Fetal Intestine Large	intestine
13	chr14:33042400-33043600	Enhancers	Fetal Intestine Small	intestine
14	chr14:33042400-33045000	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:33042400-33045600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr14:33042400-33045600	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:33042400-33045600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr14:33042400-33045600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr14:33042400-33045600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr14:33042400-33045600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr14:33042400-33045600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr14:33042400-33045600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:33042400-33046000	Weak transcription	Right Ventricle	heart
24	chr14:33042400-33047000	Weak transcription	GM12878-XiMat	blood
25	chr14:33042400-33053400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:33042400-33058200	Weak transcription	Left Ventricle	heart
27	chr14:33042600-33045600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:33042600-33045600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:33042600-33045600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:33042600-33046000	Enhancers	Liver	Liver
31	chr14:33042800-33043200	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links