Variant report

Variant	rs9322906
Chromosome Location	chr14:33041572-33041573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33040924..33044247-chr14:33045114..33047639,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10145392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158841	0.81[EUR][1000 genomes]
rs1956211	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28517784	0.87[EUR][1000 genomes]
rs6571538	0.85[ASN][1000 genomes]
rs8016916	0.82[EUR][1000 genomes]
rs8017259	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322905	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
2	chr14:33034800-33042000	Weak transcription	Left Ventricle	heart
3	chr14:33035000-33045600	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:33035000-33045600	Weak transcription	HSMMtube	muscle
5	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
6	chr14:33037000-33045600	Weak transcription	Brain Angular Gyrus	brain
7	chr14:33037200-33041800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:33037200-33042000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:33037200-33042200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr14:33037400-33041600	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:33037400-33041600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:33037600-33041600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:33037600-33045600	Weak transcription	Brain Anterior Caudate	brain
14	chr14:33040600-33042000	Enhancers	Fetal Intestine Large	intestine
15	chr14:33040800-33041600	Flanking Active TSS	Liver	Liver
16	chr14:33040800-33041800	Enhancers	Fetal Intestine Small	intestine
17	chr14:33041000-33041800	Enhancers	Duodenum Mucosa	Duodenum
18	chr14:33041000-33042400	Enhancers	Colon Smooth Muscle	Colon
19	chr14:33041000-33045800	Weak transcription	Brain Germinal Matrix	brain
20	chr14:33041200-33041600	Weak transcription	Fetal Heart	heart
21	chr14:33041200-33041800	Enhancers	Right Ventricle	heart
22	chr14:33041200-33042200	Enhancers	Brain Substantia Nigra	brain
23	chr14:33041200-33042200	Enhancers	Rectal Smooth Muscle	rectum
24	chr14:33041200-33042400	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr14:33041200-33042400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr14:33041200-33042400	Enhancers	Stomach Smooth Muscle	stomach
27	chr14:33041200-33042400	Enhancers	HepG2	liver
28	chr14:33041400-33042200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:33041400-33042200	Flanking Active TSS	GM12878-XiMat	blood
30	chr14:33041400-33042400	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links