Variant report

Variant	rs1158841
Chromosome Location	chr14:33045510-33045511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:33045196..33046015-chr14:34260619..34262125,4	MCF-7	breast:
2	chr14:33045040..33045583-chr14:34261847..34262373,2	MCF-7	breast:
3	chr14:33045417..33048110-chr14:34259925..34261939,2	MCF-7	breast:
4	chr14:33045071..33045934-chr14:34791938..34792645,3	MCF-7	breast:
5	chr14:33040924..33044247-chr14:33045114..33047639,3	MCF-7	breast:
6	chr14:33045054..33045996-chr14:34696817..34697414,2	MCF-7	breast:
7	chr14:33044203..33046023-chr14:35022537..35024104,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129521	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10145392	0.81[EUR][1000 genomes]
rs1028536	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11628548	1.00[ASN][1000 genomes]
rs1950703	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956211	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1956221	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1957010	1.00[CHB][hapmap]
rs4246975	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4462503	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6571550	1.00[ASN][1000 genomes]
rs7145886	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016916	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910843	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322906	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
2	chr14:33035000-33045600	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:33035000-33045600	Weak transcription	HSMMtube	muscle
4	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
5	chr14:33037000-33045600	Weak transcription	Brain Angular Gyrus	brain
6	chr14:33037600-33045600	Weak transcription	Brain Anterior Caudate	brain
7	chr14:33041000-33045800	Weak transcription	Brain Germinal Matrix	brain
8	chr14:33042200-33045600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:33042200-33045600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:33042400-33045600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr14:33042400-33045600	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:33042400-33045600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:33042400-33045600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:33042400-33045600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr14:33042400-33045600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:33042400-33045600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr14:33042400-33045600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr14:33042400-33046000	Weak transcription	Right Ventricle	heart
19	chr14:33042400-33047000	Weak transcription	GM12878-XiMat	blood
20	chr14:33042400-33053400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr14:33042400-33058200	Weak transcription	Left Ventricle	heart
22	chr14:33042600-33045600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:33042600-33045600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:33042600-33045600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:33042600-33046000	Enhancers	Liver	Liver
26	chr14:33043200-33045600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:33045000-33045600	Enhancers	Brain Substantia Nigra	brain
28	chr14:33045000-33046000	Enhancers	Colon Smooth Muscle	Colon
29	chr14:33045200-33046000	Enhancers	Fetal Heart	heart
30	chr14:33045400-33045600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr14:33045400-33045600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr14:33045400-33045800	Active TSS	Ovary	ovary

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