Variant report

Variant	rs1950703
Chromosome Location	chr14:33046388-33046389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:33034545..33036895-chr14:33045700..33047340,2	MCF-7	breast:
2	chr14:33045417..33048110-chr14:34259925..34261939,2	MCF-7	breast:
3	chr14:33040924..33044247-chr14:33045114..33047639,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1028536	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1158841	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628548	1.00[ASN][1000 genomes]
rs1956211	0.86[CEU][hapmap]
rs1956221	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1957010	1.00[CHB][hapmap]
rs4246975	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4462503	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6571550	1.00[ASN][1000 genomes]
rs7145886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016916	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
2	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
3	chr14:33042400-33047000	Weak transcription	GM12878-XiMat	blood
4	chr14:33042400-33053400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:33042400-33058200	Weak transcription	Left Ventricle	heart
6	chr14:33045600-33046600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:33045600-33047400	Enhancers	Brain Angular Gyrus	brain
8	chr14:33045600-33047600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:33045600-33048000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:33045800-33046600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:33046000-33046400	Enhancers	Brain Cingulate Gyrus	brain
12	chr14:33046000-33046400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr14:33046000-33046400	Enhancers	Brain Substantia Nigra	brain
14	chr14:33046000-33046400	Enhancers	Rectal Smooth Muscle	rectum
15	chr14:33046000-33047400	Enhancers	Brain Hippocampus Middle	brain
16	chr14:33046000-33048400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr14:33046000-33063000	Weak transcription	Ovary	ovary
18	chr14:33046200-33046400	Enhancers	Colon Smooth Muscle	Colon
19	chr14:33046200-33046400	Enhancers	Duodenum Mucosa	Duodenum
20	chr14:33046200-33046600	Enhancers	Fetal Heart	heart
21	chr14:33046200-33046800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr14:33046200-33047000	Weak transcription	HSMMtube	muscle
23	chr14:33046200-33047600	Weak transcription	Brain Germinal Matrix	brain
24	chr14:33046200-33053400	Weak transcription	Fetal Muscle Leg	muscle
25	chr14:33046200-33057000	Weak transcription	Brain Anterior Caudate	brain
26	chr14:33046200-33058200	Weak transcription	Right Ventricle	heart

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