Variant report

Variant	rs1028536
Chromosome Location	chr14:33118801-33118802
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1158841	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11628548	1.00[ASN][1000 genomes]
rs1950703	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1956221	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4246975	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4462503	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6571550	1.00[ASN][1000 genomes]
rs7145886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8016916	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs910843	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33099200-33120400	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:33104600-33120400	Weak transcription	HSMMtube	muscle
3	chr14:33107000-33130600	Weak transcription	Left Ventricle	heart
4	chr14:33113400-33120400	Weak transcription	Fetal Heart	heart
5	chr14:33113800-33130600	Weak transcription	Right Ventricle	heart
6	chr14:33115000-33125600	Weak transcription	Aorta	Aorta
7	chr14:33115000-33134400	Weak transcription	Psoas Muscle	Psoas
8	chr14:33117000-33125600	Weak transcription	Brain Angular Gyrus	brain
9	chr14:33117800-33124800	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:33117800-33125800	Weak transcription	Brain Substantia Nigra	brain
11	chr14:33117800-33149200	Weak transcription	Colon Smooth Muscle	Colon
12	chr14:33118200-33122800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:33118400-33126000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:33118600-33120400	Weak transcription	Brain Anterior Caudate	brain
15	chr14:33118600-33125800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:33118600-33125800	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links