Variant report

Variant	rs1956221
Chromosome Location	chr14:33076327-33076328
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1028536	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1158841	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11628548	1.00[ASN][1000 genomes]
rs1950703	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1957010	1.00[CHB][hapmap]
rs4246975	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4462503	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6571550	1.00[ASN][1000 genomes]
rs7145886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8016916	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs910843	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33057800-33078200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:33064800-33079600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:33067400-33077800	Weak transcription	HSMM	muscle
4	chr14:33069800-33080000	Weak transcription	Fetal Brain Female	brain
5	chr14:33071000-33076400	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:33071200-33076400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:33071800-33076600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:33072000-33078600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:33072200-33103600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr14:33072400-33076600	Weak transcription	Brain Substantia Nigra	brain
11	chr14:33072400-33077800	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:33072400-33078000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:33072400-33078200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:33072400-33078200	Weak transcription	Fetal Muscle Leg	muscle
15	chr14:33072400-33078400	Weak transcription	Brain Angular Gyrus	brain
16	chr14:33072400-33091800	Weak transcription	Left Ventricle	heart
17	chr14:33072600-33078400	Weak transcription	Aorta	Aorta
18	chr14:33072800-33076400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:33072800-33078000	Weak transcription	Brain Anterior Caudate	brain
20	chr14:33075000-33078200	Weak transcription	Psoas Muscle	Psoas
21	chr14:33075000-33078600	Weak transcription	Right Atrium	heart
22	chr14:33075600-33076400	Strong transcription	HSMMtube	muscle
23	chr14:33075600-33076600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:33075600-33077000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr14:33075600-33081600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr14:33076000-33077800	Weak transcription	HMEC	breast
27	chr14:33076000-33078400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr14:33076000-33083200	Enhancers	NHDF-Ad	bronchial
29	chr14:33076200-33076400	Enhancers	Fetal Heart	heart
30	chr14:33076200-33077800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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