Variant report

Variant	rs1014934
Chromosome Location	chr13:52069057-52069058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3818360	0.91[CEU][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7336209	0.95[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7991685	0.88[ASW][hapmap];0.95[CEU][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7993686	0.86[CEU][hapmap];0.81[YRI][hapmap]
rs7997510	0.95[CHB][hapmap];0.89[ASN][1000 genomes]
rs9535650	0.86[CEU][hapmap]
rs9535657	0.88[ASW][hapmap];0.95[CEU][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9535664	0.91[CEU][hapmap];0.85[TSI][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9596506	0.95[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1014934	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52060200-52071200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:52068000-52069800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:52068400-52069600	Weak transcription	HSMMtube	muscle
4	chr13:52068600-52075000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links