Variant report

Variant	rs7336209
Chromosome Location	chr13:51987110-51987111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51986391..51989343-chr13:52354018..52356023,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1014934	0.95[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3818360	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7991685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7993686	0.91[CEU][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7997510	0.83[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs9526760	0.98[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9535650	0.91[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9535657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535664	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596506	1.00[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9788315	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7336209	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:51946200-51988000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr13:51950200-51999800	Weak transcription	Brain Germinal Matrix	brain
6	chr13:51958000-51996800	Weak transcription	Thymus	Thymus
7	chr13:51958200-51990000	Weak transcription	HMEC	breast
8	chr13:51958400-51987800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:51959800-51989400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:51962200-51989600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr13:51962200-51993200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:51963200-52024800	Weak transcription	Fetal Intestine Large	intestine
13	chr13:51963600-51989800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr13:51963600-52003600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr13:51968200-51989800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr13:51969600-51995000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr13:51971800-51990000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr13:51971800-52025000	Weak transcription	Fetal Stomach	stomach
19	chr13:51972000-51987800	Weak transcription	Adipose Nuclei	Adipose
20	chr13:51972000-51988000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr13:51972000-51989600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr13:51972000-51989800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr13:51972000-51990000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr13:51972000-51990000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr13:51972000-51990000	Weak transcription	K562	blood
26	chr13:51972000-51990000	Weak transcription	NHEK	skin
27	chr13:51972000-51990000	Weak transcription	NHLF	lung
28	chr13:51972000-51993400	Weak transcription	Stomach Mucosa	stomach
29	chr13:51972000-51995000	Weak transcription	Placenta	Placenta
30	chr13:51972000-51995200	Weak transcription	HSMMtube	muscle
31	chr13:51972000-51996800	Weak transcription	Ovary	ovary
32	chr13:51972000-51999400	Weak transcription	Small Intestine	intestine
33	chr13:51972000-52005200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr13:51972000-52016000	Weak transcription	Pancreas	Pancrea
35	chr13:51972200-51989600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr13:51972400-51996400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr13:51972600-51990000	Weak transcription	A549	lung
38	chr13:51972600-51993000	Weak transcription	Colon Smooth Muscle	Colon
39	chr13:51972800-51989600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr13:51973200-51992000	Weak transcription	NHDF-Ad	bronchial
41	chr13:51973600-51988000	Weak transcription	Aorta	Aorta
42	chr13:51973800-51993200	Weak transcription	Hela-S3	cervix
43	chr13:51974200-51989400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr13:51974200-51989600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr13:51974400-51988000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr13:51974400-51989800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr13:51974800-51987800	Weak transcription	Primary T cells from cord blood	blood
48	chr13:51976000-51988000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr13:51977000-51996800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr13:51977200-51988000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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