Variant report

Variant	rs9526760
Chromosome Location	chr13:52003965-52003966
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52001846..52004227-chr13:52025679..52027392,2	MCF-7	breast:
2	chr13:51999630..52001692-chr13:52003393..52006218,2	K562	blood:
3	chr13:52003676..52005764-chr13:52007296..52009938,2	K562	blood:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3818360	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7336209	0.98[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7991685	0.98[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9535657	0.98[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9535664	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9526760	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:51963200-52024800	Weak transcription	Fetal Intestine Large	intestine
5	chr13:51971800-52025000	Weak transcription	Fetal Stomach	stomach
6	chr13:51972000-52005200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:51972000-52016000	Weak transcription	Pancreas	Pancrea
8	chr13:51984400-52024800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr13:51988800-52024400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr13:51990000-52016600	Weak transcription	Fetal Intestine Small	intestine
11	chr13:51991400-52006200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr13:51992400-52025400	Weak transcription	Esophagus	oesophagus
13	chr13:51994600-52005600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr13:51995400-52023400	Weak transcription	Fetal Kidney	kidney
15	chr13:51995400-52024600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr13:51995600-52019000	Weak transcription	Gastric	stomach
17	chr13:51995600-52023400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr13:51995600-52025000	Weak transcription	Right Ventricle	heart
19	chr13:51995600-52025600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:51995800-52008000	Weak transcription	Hela-S3	cervix
21	chr13:51997000-52007200	Weak transcription	Psoas Muscle	Psoas
22	chr13:51997000-52025200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr13:51997400-52024400	Weak transcription	Thymus	Thymus
24	chr13:51997600-52006600	Weak transcription	Fetal Heart	heart
25	chr13:51997600-52023200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr13:51997600-52023600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr13:51999400-52007200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr13:51999800-52004600	Strong transcription	A549	lung
29	chr13:51999800-52006400	Weak transcription	Brain Angular Gyrus	brain
30	chr13:51999800-52011800	Weak transcription	Left Ventricle	heart
31	chr13:51999800-52022400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr13:51999800-52023000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr13:52000000-52006200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr13:52000000-52007600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr13:52000200-52005200	Weak transcription	Brain Substantia Nigra	brain
36	chr13:52000400-52006800	Weak transcription	Primary T cells from cord blood	blood
37	chr13:52000600-52009800	Weak transcription	HSMMtube	muscle
38	chr13:52000600-52025200	Weak transcription	Small Intestine	intestine
39	chr13:52000800-52005400	Strong transcription	HSMM	muscle
40	chr13:52001000-52010000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr13:52001200-52004600	Strong transcription	Primary B cells from peripheral blood	blood
42	chr13:52001200-52005600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr13:52001200-52005600	Strong transcription	NH-A	brain
44	chr13:52001200-52022800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr13:52001400-52005600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr13:52001400-52024600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr13:52001600-52004000	Weak transcription	Brain Hippocampus Middle	brain
48	chr13:52001600-52004400	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr13:52001600-52004800	Strong transcription	Placenta	Placenta
50	chr13:52001600-52005000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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