Variant report

Variant	rs9788315
Chromosome Location	chr13:51909155-51909156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10454626	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3818360	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7322779	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7330764	0.86[EUR][1000 genomes]
rs7336209	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7991685	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7993686	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316533	0.86[EUR][1000 genomes]
rs9535650	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9535657	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9535664	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9596497	0.80[EUR][1000 genomes]
rs9596506	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
2	chr13:51900200-51914000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:51900400-51938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr13:51900800-51913400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:51903400-51913600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:51905000-51913800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:51905400-51915200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:51906000-51917200	Weak transcription	HSMM	muscle
9	chr13:51906000-51944400	Weak transcription	Spleen	Spleen
10	chr13:51906200-51935400	Weak transcription	HSMMtube	muscle
11	chr13:51906800-51917200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr13:51907800-51933200	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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