Variant report

Variant	rs9316533
Chromosome Location	chr13:51887139-51887140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51885872..51888143-chr13:51888698..51890403,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2153512	0.85[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.80[TSI][hapmap];0.82[ASN][1000 genomes]
rs3818360	0.83[MEX][hapmap]
rs7322779	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7330764	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990847	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7991685	0.84[MEX][hapmap]
rs7993686	0.81[CEU][hapmap];0.92[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs9535650	0.84[MEX][hapmap]
rs9535657	0.84[MEX][hapmap]
rs9535664	0.84[MEX][hapmap]
rs9596495	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9596497	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9596498	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9596506	0.84[MEX][hapmap]
rs9788315	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51853000-51889600	Weak transcription	Brain Angular Gyrus	brain
2	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
3	chr13:51877000-51887800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:51877000-51889200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:51877800-51890000	Weak transcription	Lung	lung
6	chr13:51879800-51889200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:51881600-51889400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr13:51881800-51889000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:51883400-51887800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr13:51883400-51889000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr13:51883400-51889200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr13:51885400-51889400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr13:51885600-51889000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr13:51885600-51889000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr13:51885800-51887400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr13:51885800-51889000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr13:51885800-51889000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr13:51885800-51889600	Weak transcription	Brain Hippocampus Middle	brain
19	chr13:51886200-51889000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr13:51886400-51889000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr13:51886400-51889200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:51886600-51889400	Weak transcription	Brain Anterior Caudate	brain
23	chr13:51886600-51889400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr13:51886600-51889600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr13:51886600-51889600	Weak transcription	Brain Substantia Nigra	brain
26	chr13:51886600-51890400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr13:51886800-51889000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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