Variant report

Variant	rs10149348
Chromosome Location	chr14:96925568-96925569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:96907078..96909690-chr14:96925295..96927351,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10129237	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10139980	0.84[AFR][1000 genomes]
rs10143377	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11160339	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11844986	0.93[AFR][1000 genomes]
rs11851943	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12323526	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12323934	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2150311	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403222	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28675692	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4491437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58118443	0.89[AMR][1000 genomes]
rs7140228	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7149243	0.89[AMR][1000 genomes]
rs7151821	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086482	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086483	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086484	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086492	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090306	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8004363	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8006946	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8007005	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010890	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8011245	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018645	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8023242	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043142	chr14:96096263-96978016	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv542177	chr14:96096263-96978016	Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv482589	chr14:96805418-96985830	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv1042409	chr14:96832303-97115668	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv542178	chr14:96832303-97115668	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv902211	chr14:96864309-96986153	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
7	esv3442210	chr14:96878392-97038700	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:96913000-96926600	Weak transcription	Pancreas	Pancrea
2	chr14:96917200-96954800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:96919200-96927000	Weak transcription	Fetal Intestine Large	intestine
4	chr14:96919200-96927200	Weak transcription	Spleen	Spleen
5	chr14:96919400-96926800	Weak transcription	Fetal Intestine Small	intestine
6	chr14:96922600-96928400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:96924600-96926800	Weak transcription	HepG2	liver
8	chr14:96924600-96927200	Weak transcription	Fetal Thymus	thymus

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