Variant report

Variant	rs7151821
Chromosome Location	chr14:96928073-96928074
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:96926645..96928449-chr14:96967530..96969889,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000090060	Chromatin interaction
ENSG00000260806	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10129237	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10139980	0.86[AFR][1000 genomes]
rs10143377	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10149348	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11160339	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11844986	0.91[AFR][1000 genomes]
rs11851943	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12323526	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12323934	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2150311	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403222	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28675692	1.00[AMR][1000 genomes]
rs4491437	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58118443	0.89[AMR][1000 genomes]
rs7140228	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7149243	0.89[AMR][1000 genomes]
rs74086482	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086483	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086484	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086492	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090306	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8004363	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8006946	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8007005	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010890	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8011245	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018645	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8023242	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043142	chr14:96096263-96978016	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv542177	chr14:96096263-96978016	Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv482589	chr14:96805418-96985830	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv1042409	chr14:96832303-97115668	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv542178	chr14:96832303-97115668	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv902211	chr14:96864309-96986153	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
7	esv3442210	chr14:96878392-97038700	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:96917200-96954800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:96922600-96928400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:96926600-96929400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:96926600-96929600	Enhancers	Pancreas	Pancrea
5	chr14:96926800-96928200	Enhancers	HepG2	liver
6	chr14:96926800-96928400	Weak transcription	Thymus	Thymus
7	chr14:96926800-96930800	Enhancers	Fetal Intestine Small	intestine
8	chr14:96927000-96930800	Enhancers	Fetal Intestine Large	intestine
9	chr14:96927000-96930800	Enhancers	Placenta	Placenta
10	chr14:96927200-96928800	Enhancers	Gastric	stomach
11	chr14:96927200-96929000	Enhancers	Fetal Thymus	thymus
12	chr14:96927400-96929600	Enhancers	Stomach Mucosa	stomach
13	chr14:96927800-96928800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:96928000-96928400	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links