Variant report

Variant	rs10149825
Chromosome Location	chr14:35268032-35268033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35265992..35268541-chr14:35273721..35276844,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10131554	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10143208	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10146953	0.83[AMR][1000 genomes]
rs10147300	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10147386	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10147966	0.83[AMR][1000 genomes]
rs10148768	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10151586	0.83[AMR][1000 genomes]
rs10162531	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28489895	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28571108	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28612125	0.83[AMR][1000 genomes]
rs28613490	0.83[AMR][1000 genomes]
rs28701139	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28735013	0.84[AFR][1000 genomes]
rs9806067	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1051540	chr14:35200858-35278635	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv1053722	chr14:35257458-35465784	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35221400-35280800	Strong transcription	Primary T helper cells PMA-I stimulated	--
2	chr14:35221600-35274600	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:35226000-35273400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:35226000-35274000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:35231200-35291800	Weak transcription	Fetal Brain Male	brain
6	chr14:35232000-35269800	Weak transcription	Fetal Heart	heart
7	chr14:35232600-35293200	Weak transcription	Fetal Kidney	kidney
8	chr14:35234200-35271400	Weak transcription	Brain Angular Gyrus	brain
9	chr14:35234200-35271400	Weak transcription	Brain Anterior Caudate	brain
10	chr14:35234200-35274200	Weak transcription	Aorta	Aorta
11	chr14:35234200-35276000	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:35234200-35311600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:35245600-35271400	Weak transcription	Small Intestine	intestine
14	chr14:35246400-35271400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr14:35250200-35271400	Weak transcription	NHLF	lung
16	chr14:35251600-35276000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:35251600-35284000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:35252200-35301000	Weak transcription	Psoas Muscle	Psoas
19	chr14:35252600-35277800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr14:35253000-35274000	Weak transcription	Colonic Mucosa	Colon
21	chr14:35253200-35268600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr14:35253200-35271600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr14:35253400-35269800	Weak transcription	HSMMtube	muscle
24	chr14:35254400-35268600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr14:35256800-35272400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr14:35257400-35282000	Strong transcription	Fetal Thymus	thymus
27	chr14:35258200-35272600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:35258800-35277400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:35259000-35272200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:35259000-35272400	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr14:35260400-35283400	Strong transcription	Dnd41	blood
32	chr14:35261800-35271400	Weak transcription	Hela-S3	cervix
33	chr14:35262400-35268600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr14:35262400-35279400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr14:35262600-35271600	Weak transcription	K562	blood
36	chr14:35262600-35276800	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr14:35262600-35283200	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr14:35262600-35283800	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr14:35263200-35272400	Strong transcription	Primary B cells from peripheral blood	blood
40	chr14:35263200-35273600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:35263400-35272400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr14:35263400-35272400	Strong transcription	Adipose Nuclei	Adipose
43	chr14:35263800-35275000	Strong transcription	Primary T cells from cord blood	blood
44	chr14:35264400-35268600	Weak transcription	NH-A	brain
45	chr14:35264600-35269000	Weak transcription	HMEC	breast
46	chr14:35264800-35268600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:35264800-35271400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr14:35264800-35276600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:35265000-35268800	Weak transcription	NHEK	skin
50	chr14:35265000-35269200	Weak transcription	NHDF-Ad	bronchial

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