Variant report

Variant	rs9806067
Chromosome Location	chr14:35360303-35360304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000258738	Chromatin interaction
ENSG00000258704	Chromatin interaction
ENSG00000198604	Chromatin interaction
ENSG00000100883	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10131554	1.00[AMR][1000 genomes]
rs10143208	1.00[AMR][1000 genomes]
rs10146953	1.00[AMR][1000 genomes]
rs10147300	1.00[AMR][1000 genomes]
rs10147386	1.00[AMR][1000 genomes]
rs10147966	1.00[AMR][1000 genomes]
rs10148768	1.00[AMR][1000 genomes]
rs10149825	0.83[AMR][1000 genomes]
rs10151586	1.00[AMR][1000 genomes]
rs10162531	1.00[AMR][1000 genomes]
rs28489895	1.00[AMR][1000 genomes]
rs28571108	1.00[AMR][1000 genomes]
rs28612125	1.00[AMR][1000 genomes]
rs28613490	1.00[AMR][1000 genomes]
rs28701139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1053722	chr14:35257458-35465784	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1045939	chr14:35311074-35494703	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
6	nsv456203	chr14:35311272-35512335	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
7	nsv564200	chr14:35311272-35512335	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35360000-35360400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr14:35360000-35360600	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr14:35360000-35360600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr14:35360200-35360600	Enhancers	Primary T cells from cord blood	blood
5	chr14:35360200-35360600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr14:35360200-35360600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:35360200-35360600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr14:35360200-35360600	Enhancers	GM12878-XiMat	blood
9	chr14:35360200-35360600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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