Variant report

Variant	rs10150368
Chromosome Location	chr14:24853102-24853103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24852725..24854755-chr14:24857683..24859392,2	MCF-7	breast:
2	chr14:24842387..24848555-chr14:24850240..24853482,8	MCF-7	breast:
3	chr14:24851150..24853943-chr14:24897925..24899735,2	MCF-7	breast:
4	chr14:24848629..24853303-chr14:24854716..24857758,5	MCF-7	breast:
5	chr14:24834903..24837765-chr14:24851744..24853468,2	MCF-7	breast:
6	chr14:24847163..24849658-chr14:24851937..24853825,2	K562	blood:
7	chr14:24851445..24853553-chr14:24858917..24861549,2	K562	blood:
8	chr14:24852229..24853960-chr14:24857056..24859882,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10139438	0.83[AMR][1000 genomes]
rs10141896	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10220345	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12323726	1.00[EUR][1000 genomes]
rs3759625	0.83[AMR][1000 genomes]
rs3759630	0.83[AMR][1000 genomes]
rs8014581	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24847000-24859600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr14:24847200-24857600	Weak transcription	Ovary	ovary
3	chr14:24847400-24857800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:24847600-24854600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:24847800-24857400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:24848200-24857600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:24848200-24858400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:24848400-24856000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:24849400-24857400	Weak transcription	K562	blood
10	chr14:24850200-24854800	Weak transcription	Fetal Intestine Small	intestine
11	chr14:24850400-24855400	Weak transcription	Fetal Intestine Large	intestine
12	chr14:24851200-24857000	Weak transcription	Placenta	Placenta
13	chr14:24851600-24853200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:24852000-24856000	Weak transcription	Fetal Kidney	kidney
15	chr14:24852600-24860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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