Variant report

Variant	rs10220345
Chromosome Location	chr14:24857456-24857457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24854983..24857784-chr14:24896840..24900485,3	MCF-7	breast:
2	chr14:24852229..24853960-chr14:24857056..24859882,4	K562	blood:
3	chr14:24856436..24858172-chr14:24866712..24868396,2	K562	blood:
4	chr14:24842752..24851075-chr14:24856697..24867572,25	MCF-7	breast:
5	chr14:24856106..24857920-chr14:24860638..24862209,2	K562	blood:
6	chr14:24839870..24842744-chr14:24857237..24859183,2	K562	blood:
7	chr14:24848629..24853303-chr14:24854716..24857758,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205978	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100968	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10141896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10150368	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12323726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24847000-24859600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr14:24847200-24857600	Weak transcription	Ovary	ovary
3	chr14:24847400-24857800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:24848200-24857600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:24848200-24858400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:24852600-24860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:24854800-24859200	Enhancers	Fetal Intestine Small	intestine
8	chr14:24855400-24859200	Enhancers	Fetal Intestine Large	intestine
9	chr14:24855600-24858200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:24856200-24857800	Weak transcription	Fetal Lung	lung
11	chr14:24856200-24858200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:24856400-24860600	Weak transcription	Stomach Mucosa	stomach
13	chr14:24856400-24861600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr14:24856600-24857800	Weak transcription	Fetal Stomach	stomach
15	chr14:24856600-24861400	Weak transcription	Fetal Kidney	kidney
16	chr14:24857000-24860800	Enhancers	Placenta	Placenta
17	chr14:24857200-24858000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:24857400-24858000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr14:24857400-24858400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr14:24857400-24858600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr14:24857400-24859000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:24857400-24859000	Bivalent Enhancer	HepG2	liver
23	chr14:24857400-24859000	Enhancers	K562	blood

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