Variant report

Variant	rs10150589
Chromosome Location	chr14:79314613-79314614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10137452	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848889	0.83[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379321	1.00[AMR][1000 genomes]
rs1509150	1.00[YRI][hapmap]
rs28451628	1.00[AMR][1000 genomes]
rs28452471	1.00[AMR][1000 genomes]
rs9323667	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79310600-79315600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr14:79314000-79317000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:79314200-79317800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:79314200-79317800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:79314400-79315000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr14:79314400-79315600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:79314400-79316800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr14:79314400-79317800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr14:79314600-79316400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:79314600-79317800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:79314600-79318200	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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