Variant report

Variant	rs28452471
Chromosome Location	chr14:79365145-79365146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10137452	1.00[AMR][1000 genomes]
rs10150589	1.00[AMR][1000 genomes]
rs11848889	1.00[AMR][1000 genomes]
rs13379321	1.00[AMR][1000 genomes]
rs28451628	1.00[AMR][1000 genomes]
rs9323667	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79359400-79365200	Weak transcription	Brain Hippocampus Middle	brain
2	chr14:79363400-79365400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:79364200-79366800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:79364200-79366800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:79364400-79365800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr14:79364400-79366600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr14:79364600-79365600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:79364600-79365800	Enhancers	Brain Angular Gyrus	brain
9	chr14:79364800-79365200	Enhancers	Fetal Brain Male	brain
10	chr14:79364800-79365400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr14:79364800-79366000	Enhancers	Brain Anterior Caudate	brain
12	chr14:79365000-79365800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr14:79365000-79365800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:79365000-79365800	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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