Variant report

Variant	rs1015126
Chromosome Location	chr3:89364451-89364452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11919479	0.85[LWK][hapmap]
rs2137486	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs56132991	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58029174	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73846135	1.00[AMR][1000 genomes]
rs73846136	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73846138	0.83[AMR][1000 genomes]
rs73846139	0.83[AMR][1000 genomes]
rs73846143	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73846150	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs870900	1.00[ASW][hapmap];0.95[LWK][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs954965	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590921	chr3:89294149-89392778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590922	chr3:89314862-89417064	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590923	chr3:89336417-89417171	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89363600-89369000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:89364200-89365200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:89364200-89365200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:89364400-89365200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:89364400-89365400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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