Variant report
| Variant | rs2137486 |
|---|---|
| Chromosome Location | chr3:89362129-89362130 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs1015126 | 1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11919479 | 0.81[LWK][hapmap] |
| rs56132991 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58029174 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73846135 | 1.00[AMR][1000 genomes] |
| rs73846136 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73846138 | 0.83[AMR][1000 genomes] |
| rs73846139 | 0.83[AMR][1000 genomes] |
| rs73846143 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73846150 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7636790 | 0.81[MKK][hapmap] |
| rs870900 | 0.95[LWK][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs954965 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv437866 | chr3:89247881-89480265 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv590921 | chr3:89294149-89392778 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv590922 | chr3:89314862-89417064 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv590923 | chr3:89336417-89417171 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
