Variant report

Variant	rs10151477
Chromosome Location	chr14:20611785-20611786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:20611720-20611870	GM06990	blood:	n/a	n/a
2	TAL1	chr14:20611701-20611995	K562	blood:	n/a	chr14:20611842-20611860
3	TEAD4	chr14:20611619-20611965	K562	blood:	n/a	n/a
4	GATA1	chr14:20611681-20612164	K562	blood:	n/a	chr14:20611806-20611813 chr14:20611806-20611813 chr14:20611803-20611813 chr14:20611848-20611864 chr14:20611851-20611860 chr14:20611806-20611813 chr14:20611848-20611864 chr14:20611804-20611816 chr14:20611842-20611859 chr14:20611805-20611815 chr14:20611846-20611867 chr14:20611802-20611818

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:20611779-20611829	SAEC	small airway:	n/a
2	chr14:20611779-20611829	SK-N-SH	brain:	n/a
3	chr14:20611779-20611829	U87	brain:	n/a
4	chr14:20611779-20611829	GM12878	blood:	n/a
5	chr14:20611779-20611829	HMEC	breast:	n/a
6	chr14:20611779-20611829	RPTEC	kidney:	n/a
7	chr14:20611779-20611829	BE2_C	brain:	n/a
8	chr14:20611779-20611829	NHDF-neo	bronchial:	n/a
9	chr14:20611779-20611829	ProgFib	skin:	n/a
10	chr14:20611779-20611829	PANC-1	pancreas:	n/a
11	chr14:20611779-20611829	HPAEpiC	pulmonary alveolar:	n/a
12	chr14:20611779-20611829	LNCaP	prostate:	n/a
13	chr14:20611779-20611829	AG09309	skin:	n/a
14	chr14:20611779-20611829	ECC-1	luminal epithelium:	n/a
15	chr14:20611779-20611829	AG04449	skin:	fetal
16	chr14:20611779-20611829	Hepatocyte	liver:	n/a
17	chr14:20611779-20611829	K562	blood:	n/a
18	chr14:20611779-20611829	HRCEpiC	kidney:	n/a
19	chr14:20611779-20611829	HCF	heart:	n/a
20	chr14:20611779-20611829	Caco-2	colon:	n/a
21	chr14:20611779-20611829	SKMC	muscle:	n/a
22	chr14:20611779-20611829	A549	lung:	n/a
23	chr14:20611779-20611829	HEEpiC	esophagus:	n/a
24	chr14:20611779-20611829	PrEC	prostate:	n/a
25	chr14:20611779-20611829	AG09319	gingival:	n/a
26	chr14:20611779-20611829	PFSK-1	brain:	n/a
27	chr14:20611779-20611829	ovcar-3	ovarian:	n/a
28	chr14:20611779-20611829	MCF10A-Er-Src	breast:	n/a
29	chr14:20611779-20611829	AG10803	skin:	n/a
30	chr14:20611779-20611829	HUVEC	blood vessel:	n/a
31	chr14:20611779-20611829	AoSMC	blood vessel:	n/a
32	chr14:20611779-20611829	HNPCEpiC	eye:	n/a
33	chr14:20611779-20611829	GM06990	blood:	n/a
34	chr14:20611779-20611829	MCF-7	breast:	n/a
35	chr14:20611779-20611829	T-47D	breast:	n/a
36	chr14:20611779-20611829	SK-N-MC	brain:	n/a
37	chr14:20611779-20611829	HCPEpiC	choroid plexus:	n/a
38	chr14:20611779-20611829	HRE	kidney:	n/a
39	chr14:20611779-20611829	HCM	heart:	n/a
40	chr14:20611779-20611829	H1-hESC	embryonic stem cell:	embryo
41	chr14:20611779-20611829	GM12892	blood:	n/a
42	chr14:20611779-20611829	Hela-S3	cervix:	n/a
43	chr14:20611779-20611829	GM12891	blood:	n/a
44	chr14:20611779-20611829	SK-N-SH_RA	brain:	n/a
45	chr14:20611779-20611829	BJ	skin:	n/a
46	chr14:20611779-20611829	HRPEpiC	eye:	n/a
47	chr14:20611779-20611829	IMR90	lung:	fetal
48	chr14:20611779-20611829	CMK	blood:	n/a
49	chr14:20611779-20611829	HAEpiC	amniotic membrane:	n/a
50	chr14:20611779-20611829	NT2-D1	testis:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:20611730..20613442-chr14:20616450..20619196,2	K562	blood:

No data

Variant related genes	Relation type
OR4N5	TF binding region
OR4N5	CpG island
ENSG00000259074	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10047823	1.00[ASN][1000 genomes]
rs10131163	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10131326	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10132766	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10132976	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10133654	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10134050	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10134238	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10134272	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10134379	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10134472	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10136358	1.00[ASN][1000 genomes]
rs10136968	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10137715	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10138104	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10138347	0.89[AFR][1000 genomes]
rs10140908	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10141025	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10142603	1.00[CHB][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10143483	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10143489	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10146971	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10147272	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10147297	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10147782	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10149305	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10149446	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10220676	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11159010	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11159012	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17308206	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28408764	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28590595	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28605214	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56283929	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56814452	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57614255	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74033809	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74037240	1.00[ASN][1000 genomes]
rs9323583	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9323584	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9323586	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9323588	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9323589	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901299	chr14:20191869-20756887	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2751266	chr14:20203125-20626160	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv2751267	chr14:20203125-20626160	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv430745	chr14:20203125-20655466	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	esv2751268	chr14:20203125-20716841	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
7	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
8	nsv563812	chr14:20404091-20694968	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv1043938	chr14:20427182-20776276	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	nsv541971	chr14:20427182-20776276	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
11	nsv563829	chr14:20445370-20694968	Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
12	nsv482598	chr14:20477541-20632285	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv832738	chr14:20498622-20644451	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv428618	chr14:20500951-20660726	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv1037160	chr14:20517485-20901811	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
16	nsv541974	chr14:20517485-20901811	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
17	nsv1037890	chr14:20537751-20669240	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv901465	chr14:20539305-20622987	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv974445	chr14:20542565-20613564	Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
20	esv2761819	chr14:20577698-20677591	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv521393	chr14:20603899-20622987	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv832739	chr14:20604126-20734222	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:20611200-20612600	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links