Variant report

Variant	rs28605214
Chromosome Location	chr14:20622779-20622780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:20615947..20618319-chr14:20622650..20625486,3	K562	blood:
2	chr14:20615947..20618319-chr14:20622650..20625017,2	K562	blood:

Variant related genes	Relation type
ENSG00000259074	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10047823	1.00[ASN][1000 genomes]
rs10131163	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10131326	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10131458	0.80[AFR][1000 genomes]
rs10132766	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10132976	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10133654	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10134050	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10134238	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10134272	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10134379	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10134472	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10136358	1.00[ASN][1000 genomes]
rs10136968	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10137715	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10138104	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10138347	0.90[AFR][1000 genomes]
rs10140908	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10141025	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10142603	1.00[ASN][1000 genomes]
rs10143483	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10143489	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10146971	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10147272	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10147297	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10147782	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10149305	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10149446	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10151477	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10220676	1.00[ASN][1000 genomes]
rs11159010	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11159012	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17308206	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28408764	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28590595	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56283929	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56814452	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57614255	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74033809	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74037240	1.00[ASN][1000 genomes]
rs9323583	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9323584	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9323586	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9323588	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9323589	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901299	chr14:20191869-20756887	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2751266	chr14:20203125-20626160	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv2751267	chr14:20203125-20626160	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv430745	chr14:20203125-20655466	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	esv2751268	chr14:20203125-20716841	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
7	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
8	nsv563812	chr14:20404091-20694968	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv1043938	chr14:20427182-20776276	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	nsv541971	chr14:20427182-20776276	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
11	nsv563829	chr14:20445370-20694968	Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
12	nsv482598	chr14:20477541-20632285	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv832738	chr14:20498622-20644451	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv428618	chr14:20500951-20660726	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv1037160	chr14:20517485-20901811	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
16	nsv541974	chr14:20517485-20901811	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
17	nsv1037890	chr14:20537751-20669240	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv901465	chr14:20539305-20622987	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	esv2761819	chr14:20577698-20677591	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
20	nsv521393	chr14:20603899-20622987	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv832739	chr14:20604126-20734222	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
22	nsv974269	chr14:20622065-20636587	Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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