Variant report

Variant	rs10152034
Chromosome Location	chr14:26399366-26399367
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10151818	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12434661	0.88[ASN][1000 genomes]
rs12880493	0.86[ASN][1000 genomes]
rs12880504	0.86[ASN][1000 genomes]
rs12882184	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1950946	0.86[ASN][1000 genomes]
rs1956605	0.86[ASN][1000 genomes]
rs1956608	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427937	chr14:26038386-26405118	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1038014	chr14:26191545-26439394	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2758350	chr14:26227880-26405118	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2759975	chr14:26227880-26405118	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10152034	PSME2	cis	parietal	SCAN
rs10152034	SNORD8	cis	parietal	SCAN
rs10152034	RNASE8	cis	cerebellum	SCAN
rs10152034	ZNF219	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:26387000-26413000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:26397200-26399600	Enhancers	Fetal Lung	lung
3	chr14:26398200-26399400	Enhancers	Brain Substantia Nigra	brain
4	chr14:26398200-26399600	Enhancers	Fetal Brain Male	brain
5	chr14:26398600-26399600	Enhancers	Brain Germinal Matrix	brain
6	chr14:26398600-26399800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:26398600-26399800	Enhancers	Fetal Brain Female	brain
8	chr14:26398800-26399600	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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