Variant report

Variant	rs10152363
Chromosome Location	chr15:35261270-35261271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr15:35261192-35262294	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr15:35261197-35262357	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr15:35261032-35262284	GM12878	blood:	n/a	n/a
4	GABPA	chr15:35261156-35262437	A549	lung:	n/a	chr15:35262002-35262009
5	GABPA	chr15:35260987-35262585	MCF-7	breast:	n/a	chr15:35262002-35262009
6	POLR2A	chr15:35261165-35262409	GM12891	blood:	n/a	n/a
7	JUN	chr15:35261254-35262542	K562	blood:	n/a	n/a
8	POLR2A	chr15:35261149-35262360	HepG2	liver:	n/a	n/a
9	CTCF	chr15:35261139-35262845	A549	lung:	n/a	chr15:35262082-35262098
10	SREBP2	chr15:35260747-35262497	GM12878	blood:	n/a	n/a
11	MXI1	chr15:35261256-35262416	IMR90	lung:	n/a	n/a
12	WRNIP1	chr15:35260845-35262177	GM12878	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:35256436..35258004-chr15:35259347..35262190,2	MCF-7	breast:
2	chr15:35260390..35263299-chr15:35270062..35272008,3	K562	blood:
3	chr15:35252626..35258121-chr15:35259367..35263228,9	K562	blood:
4	chr15:35255428..35258097-chr15:35259367..35262801,3	K562	blood:
5	chr15:35259687..35263562-chr15:35278927..35282925,7	K562	blood:
6	chr15:35260342..35263784-chr15:35278927..35282487,7	K562	blood:
7	chr15:35219148..35220809-chr15:35259856..35261653,2	K562	blood:
8	chr15:35260390..35261999-chr15:35270459..35271963,2	K562	blood:
9	chr15:34330030..34332710-chr15:35259474..35262090,2	MCF-7	breast:

No data

Variant related genes	Relation type
AQR	TF binding region
ENSG00000169857	Chromatin interaction
ENSG00000212768	Chromatin interaction
ENSG00000198146	Chromatin interaction
ENSG00000021776	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11857217	0.94[ASW][hapmap];0.85[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs12708534	0.83[AFR][1000 genomes]
rs2862	0.96[YRI][hapmap]
rs3743121	0.83[YRI][hapmap]
rs3848167	0.94[ASW][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap]
rs4924325	0.94[ASW][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap]
rs6495731	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7164070	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164977	1.00[YRI][hapmap]
rs7177962	1.00[YRI][hapmap]
rs7179833	1.00[ASW][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35260200-35261400	Flanking Active TSS	Dnd41	blood
2	chr15:35260200-35262600	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr15:35260400-35261400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:35260600-35261400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr15:35260600-35261400	Flanking Active TSS	HMEC	breast
6	chr15:35260600-35261600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr15:35260600-35261600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr15:35260600-35261800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:35260600-35262400	Active TSS	HSMM	muscle
10	chr15:35260600-35262600	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr15:35260600-35262600	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr15:35260800-35261400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:35260800-35261400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:35260800-35261400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr15:35260800-35261400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr15:35260800-35261400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr15:35260800-35261400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:35260800-35261400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr15:35260800-35261400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:35260800-35261400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:35260800-35261400	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr15:35260800-35261400	Flanking Active TSS	Liver	Liver
23	chr15:35260800-35261400	Flanking Active TSS	Brain Cingulate Gyrus	brain
24	chr15:35260800-35261400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr15:35260800-35261400	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr15:35260800-35261400	Flanking Active TSS	Colonic Mucosa	Colon
27	chr15:35260800-35261400	Flanking Active TSS	Colon Smooth Muscle	Colon
28	chr15:35260800-35261400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr15:35260800-35261400	Flanking Active TSS	Fetal Brain Male	brain
30	chr15:35260800-35261400	Flanking Active TSS	Fetal Muscle Leg	muscle
31	chr15:35260800-35261400	Flanking Active TSS	Placenta	Placenta
32	chr15:35260800-35261400	Flanking Active TSS	Fetal Stomach	stomach
33	chr15:35260800-35261400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr15:35260800-35261400	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr15:35260800-35261400	Flanking Active TSS	Thymus	Thymus
36	chr15:35260800-35261400	Flanking Active TSS	Hela-S3	cervix
37	chr15:35260800-35261400	Flanking Active TSS	HUVEC	blood vessel
38	chr15:35260800-35261400	Flanking Active TSS	NH-A	brain
39	chr15:35260800-35261600	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr15:35260800-35261600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr15:35260800-35261600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr15:35260800-35261600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:35260800-35261600	Flanking Active TSS	Brain Angular Gyrus	brain
44	chr15:35260800-35261600	Flanking Active TSS	Brain Anterior Caudate	brain
45	chr15:35260800-35261600	Flanking Active TSS	Duodenum Mucosa	Duodenum
46	chr15:35260800-35261600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr15:35260800-35261600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr15:35260800-35261600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr15:35260800-35261600	Flanking Active TSS	Osteobl	bone
50	chr15:35260800-35261800	Flanking Active TSS	Primary B cells from cord blood	blood

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