Variant report

Variant	rs6495731
Chromosome Location	chr15:35262500-35262501
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:35262380-35262530	GM12865	blood:	n/a	n/a
2	CEBPB	chr15:35261962-35262500	K562	blood:	n/a	n/a
3	GTF3C2	chr15:35262017-35262644	Hela-S3	cervix:	n/a	n/a
4	GABPA	chr15:35260987-35262585	MCF-7	breast:	n/a	chr15:35262002-35262009
5	CTCF	chr15:35262460-35262610	AG04450	lung:	n/a	n/a
6	CEBPB	chr15:35261507-35262913	A549	lung:	n/a	n/a
7	HCFC1	chr15:35261296-35262517	Hela-S3	cervix:	n/a	n/a
8	JUN	chr15:35261254-35262542	K562	blood:	n/a	n/a
9	CTCF	chr15:35261139-35262845	A549	lung:	n/a	chr15:35262082-35262098
10	POLR2A	chr15:35261404-35262506	PFSK-1	brain:	n/a	n/a
11	POLR2A	chr15:35261469-35262509	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:35261639..35264057-chr15:35280199..35283795,4	MCF-7	breast:
2	chr15:35260390..35263299-chr15:35270062..35272008,3	K562	blood:
3	chr15:35252626..35258121-chr15:35259367..35263228,9	K562	blood:
4	chr15:35255428..35258097-chr15:35259367..35262801,3	K562	blood:
5	chr15:35259687..35263562-chr15:35278927..35282925,7	K562	blood:
6	chr15:35260342..35263784-chr15:35278927..35282487,7	K562	blood:

No data

Variant related genes	Relation type
AQR	TF binding region
ENSG00000212768	Chromatin interaction
ENSG00000021776	Chromatin interaction
ENSG00000198146	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10152363	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7164070	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35260200-35262600	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr15:35260600-35262600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr15:35260600-35262600	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr15:35260800-35262600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr15:35260800-35262600	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr15:35260800-35262600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:35260800-35262600	Active TSS	Left Ventricle	heart
8	chr15:35260800-35262600	Active TSS	Right Ventricle	heart
9	chr15:35261000-35262600	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr15:35261000-35262600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:35261000-35262600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:35261000-35262600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr15:35261000-35262600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:35261000-35262600	Active TSS	Fetal Intestine Small	intestine
15	chr15:35261000-35262600	Active TSS	Ovary	ovary
16	chr15:35261000-35262600	Active TSS	Psoas Muscle	Psoas
17	chr15:35261000-35262600	Active TSS	Stomach Mucosa	stomach
18	chr15:35261000-35262600	Active TSS	A549	lung
19	chr15:35261000-35262600	Active TSS	NHDF-Ad	bronchial
20	chr15:35261200-35262600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr15:35261200-35262600	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr15:35261200-35262600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:35261200-35262600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:35261200-35262600	Active TSS	Muscle Satellite Cultured Cells	--
25	chr15:35261200-35262600	Active TSS	Brain Hippocampus Middle	brain
26	chr15:35261200-35262600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:35261200-35262600	Active TSS	Fetal Kidney	kidney
28	chr15:35261200-35262600	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr15:35261200-35262600	Active TSS	Fetal Thymus	thymus
30	chr15:35261200-35262600	Active TSS	Lung	lung
31	chr15:35261200-35262600	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr15:35261200-35262600	Active TSS	Rectal Smooth Muscle	rectum
33	chr15:35261200-35262600	Active TSS	K562	blood
34	chr15:35261400-35262600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:35261400-35262600	Active TSS	Primary hematopoietic stem cells	blood
36	chr15:35261400-35262600	Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr15:35261400-35262600	Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr15:35261400-35262600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:35261400-35262600	Active TSS	Brain Cingulate Gyrus	brain
40	chr15:35261400-35262600	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr15:35261400-35262600	Active TSS	Brain Substantia Nigra	brain
42	chr15:35261400-35262600	Active TSS	Colonic Mucosa	Colon
43	chr15:35261400-35262600	Active TSS	Colon Smooth Muscle	Colon
44	chr15:35261400-35262600	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr15:35261400-35262600	Active TSS	Fetal Lung	lung
46	chr15:35261400-35262600	Active TSS	Fetal Stomach	stomach
47	chr15:35261400-35262600	Active TSS	Pancreas	Pancrea
48	chr15:35261400-35262600	Active TSS	Thymus	Thymus
49	chr15:35261400-35262600	Active TSS	Hela-S3	cervix
50	chr15:35261400-35262600	Active TSS	HMEC	breast

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