Variant report

Variant	rs10152629
Chromosome Location	chr15:41103535-41103536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:41103355-41103561	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:45186004..45188513-chr15:41102404..41103904,2	K562	blood:

Variant related genes	Relation type
ZFYVE19	TF binding region
DNAJC17	TF binding region
ENSG00000199377	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10162812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050702	0.94[EUR][1000 genomes]
rs12906755	1.00[JPT][hapmap]
rs3816147	1.00[JPT][hapmap]
rs59956401	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61419467	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177908	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7180036	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41100200-41107600	Weak transcription	Aorta	Aorta
2	chr15:41100400-41107800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:41100600-41103800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:41100600-41104600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:41100600-41107800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:41100600-41108800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:41100600-41108800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:41100800-41104200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:41100800-41105200	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:41100800-41106000	Weak transcription	NH-A	brain
11	chr15:41100800-41107000	Weak transcription	Fetal Kidney	kidney
12	chr15:41100800-41107400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:41100800-41107600	Weak transcription	Fetal Brain Male	brain
14	chr15:41100800-41109200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr15:41100800-41120200	Weak transcription	Small Intestine	intestine
16	chr15:41101000-41104800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:41101000-41107400	Weak transcription	Stomach Mucosa	stomach
18	chr15:41101200-41107200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:41101200-41107400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr15:41101200-41110400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:41101400-41105000	Strong transcription	Placenta	Placenta
22	chr15:41101400-41105600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr15:41101400-41106800	Strong transcription	Gastric	stomach
24	chr15:41101400-41107000	Strong transcription	Fetal Muscle Leg	muscle
25	chr15:41101400-41107400	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr15:41101400-41107600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:41101400-41107800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:41101400-41109200	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:41101400-41109600	Strong transcription	Fetal Intestine Small	intestine
30	chr15:41101400-41115800	Weak transcription	A549	lung
31	chr15:41101600-41103600	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr15:41101600-41103800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr15:41101600-41103800	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:41101600-41103800	Strong transcription	NHEK	skin
35	chr15:41101600-41105000	Weak transcription	Brain Angular Gyrus	brain
36	chr15:41101600-41106400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:41101600-41107400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr15:41101600-41107400	Strong transcription	Dnd41	blood
39	chr15:41101600-41107600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:41101600-41107800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:41101600-41107800	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr15:41101800-41103600	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr15:41101800-41104600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:41101800-41104800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:41101800-41107200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:41101800-41107200	Strong transcription	Fetal Stomach	stomach
47	chr15:41101800-41107400	Strong transcription	Brain Cingulate Gyrus	brain
48	chr15:41101800-41107400	Strong transcription	Ovary	ovary
49	chr15:41101800-41107800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr15:41101800-41107800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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