Variant report

Variant	rs61419467
Chromosome Location	chr15:41098795-41098796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr15:41098708-41100478	K562	blood:	n/a	n/a
2	SREBP1	chr15:41098583-41101657	GM12878	blood:	n/a	n/a
3	REST	chr15:41098659-41100452	H1-neurons	neurons:	n/a	chr15:41099298-41099311
4	MAX	chr15:41098788-41100300	ECC-1	luminal epithelium:	n/a	chr15:41099304-41099314
5	POLR2A	chr15:41098788-41099948	GM12892	blood:	n/a	n/a
6	NR2F2	chr15:41098712-41100234	K562	blood:	n/a	n/a
7	HCFC1	chr15:41098689-41102091	Hela-S3	cervix:	n/a	n/a
8	STAT5A	chr15:41098793-41100124	GM12878	blood:	n/a	n/a
9	POLR2A	chr15:41098744-41100281	PFSK-1	brain:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41045748..41048901-chr15:41096709..41101394,9	K562	blood:
2	chr15:41098203..41099826-chr15:41186017..41187981,2	K562	blood:
3	chr15:41068398..41070390-chr15:41097835..41100828,2	K562	blood:
4	chr15:41053870..41057648-chr15:41097391..41099914,3	K562	blood:
5	chr15:41054213..41057951-chr15:41097645..41100150,5	K562	blood:
6	chr15:41068210..41071185-chr15:41097995..41100691,2	MCF-7	breast:
7	chr15:41098123..41102222-chr15:41134582..41138137,4	K562	blood:
8	chr15:41098099..41100613-chr15:41185742..41188181,3	K562	blood:
9	chr15:41095442..41103026-chr15:41134658..41140625,11	MCF-7	breast:
10	chr15:41097893..41103310-chr15:41103796..41109268,7	MCF-7	breast:
11	chr15:41098435..41103357-chr15:41133527..41139132,10	MCF-7	breast:

No data

Variant related genes	Relation type
ZFYVE19	TF binding region
ENSG00000166140	Chromatin interaction
ENSG00000104142	Chromatin interaction
ENSG00000166145	Chromatin interaction
ENSG00000261183	Chromatin interaction
ENSG00000104129	Chromatin interaction
ENSG00000137880	Chromatin interaction
ENSG00000137824	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10152629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10162812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050702	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59956401	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177908	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7180036	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv3312254	chr15:41098700-41100323	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	esv3312255	chr15:41098714-41100320	Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41079600-41098800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:41080000-41099000	Weak transcription	Aorta	Aorta
3	chr15:41080400-41098800	Weak transcription	Brain Angular Gyrus	brain
4	chr15:41080400-41098800	Weak transcription	Brain Anterior Caudate	brain
5	chr15:41082000-41098800	Weak transcription	Fetal Kidney	kidney
6	chr15:41086000-41098800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:41086000-41098800	Weak transcription	Esophagus	oesophagus
8	chr15:41086200-41098800	Weak transcription	HSMMtube	muscle
9	chr15:41086200-41098800	Weak transcription	NHDF-Ad	bronchial
10	chr15:41089200-41098800	Weak transcription	Small Intestine	intestine
11	chr15:41089600-41098800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:41089600-41098800	Weak transcription	HMEC	breast
13	chr15:41091000-41098800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:41091600-41098800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:41092000-41098800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:41092000-41098800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:41092000-41098800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:41092200-41098800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:41092200-41098800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:41092200-41098800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:41092400-41098800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:41094400-41098800	Weak transcription	Right Atrium	heart
23	chr15:41094800-41098800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr15:41095200-41098800	Weak transcription	Lung	lung
25	chr15:41095200-41098800	Weak transcription	Thymus	Thymus
26	chr15:41096000-41099000	Weak transcription	Ovary	ovary
27	chr15:41096200-41098800	Weak transcription	Left Ventricle	heart
28	chr15:41096200-41098800	Weak transcription	Pancreas	Pancrea
29	chr15:41096800-41098800	Weak transcription	Gastric	stomach
30	chr15:41097600-41098800	Weak transcription	Fetal Stomach	stomach
31	chr15:41097800-41098800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:41098200-41098800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:41098200-41098800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr15:41098200-41098800	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr15:41098200-41098800	Enhancers	Primary B cells from peripheral blood	blood
36	chr15:41098200-41098800	Enhancers	Primary T cells from cord blood	blood
37	chr15:41098200-41098800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr15:41098200-41098800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr15:41098200-41098800	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr15:41098200-41098800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr15:41098200-41098800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr15:41098200-41098800	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr15:41098200-41098800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr15:41098200-41098800	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr15:41098200-41098800	Enhancers	Liver	Liver
46	chr15:41098200-41098800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr15:41098200-41098800	Enhancers	Fetal Brain Male	brain
48	chr15:41098200-41098800	Enhancers	Fetal Heart	heart
49	chr15:41098200-41098800	Enhancers	Fetal Intestine Large	intestine
50	chr15:41098200-41098800	Enhancers	Fetal Thymus	thymus

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