Variant report

Variant	rs10154110
Chromosome Location	chr21:47217430-47217431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:47208812..47212516-chr21:47213678..47217597,6	K562	blood:
2	chr21:47212372..47214255-chr21:47215488..47217482,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC19A1-11	chr21:47216897-47217493	NONHSAT082994
2	lnc-COL6A1-9	chr21:47216897-47218723	NONHSAT082995

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1014446	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11089024	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs12481867	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12481913	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12482094	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12482377	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12482750	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12482853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1467758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17351433	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2065334	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs2183595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2183596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838993	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2838994	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2839004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2839005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2839009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2839013	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2839014	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2839026	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2839029	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2839032	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3788208	0.81[JPT][hapmap]
rs3788211	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3788216	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3788220	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3788224	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3788227	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3920695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4434082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4818801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4819156	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4819157	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs8127369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs8127428	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs882669	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs914241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9306139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9637208	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs964975	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9977908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9978740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531546	chr21:46504151-47411772	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
2	nsv1058665	chr21:46719445-47634282	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	91 gene(s)	inside rSNPs	diseases
3	nsv544486	chr21:46719445-47634282	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	91 gene(s)	inside rSNPs	diseases
4	nsv1059230	chr21:46956877-47907990	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	n/a
5	nsv544491	chr21:46956877-47907990	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	n/a
6	nsv1058472	chr21:47027823-47797326	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	n/a
7	nsv544492	chr21:47027823-47797326	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	n/a
8	nsv428043	chr21:47179244-47471971	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	n/a
9	nsv1065959	chr21:47188878-48091343	Bivalent Enhancer Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	n/a
10	esv3378185	chr21:47217416-47217891	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
11	esv8212	chr21:47217418-47217573	Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:47213400-47219800	Weak transcription	Fetal Thymus	thymus
2	chr21:47217000-47217600	ZNF genes & repeats	Fetal Kidney	kidney
3	chr21:47217200-47217600	ZNF genes & repeats	Brain Angular Gyrus	brain
4	chr21:47217200-47217600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
5	chr21:47217200-47217600	ZNF genes & repeats	Thymus	Thymus
6	chr21:47217200-47217800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr21:47217200-47217800	ZNF genes & repeats	Gastric	stomach
8	chr21:47217200-47217800	ZNF genes & repeats	Right Atrium	heart
9	chr21:47217200-47217800	Active TSS	Spleen	Spleen
10	chr21:47217200-47218000	ZNF genes & repeats	Pancreas	Pancrea
11	chr21:47217400-47217600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
12	chr21:47217400-47217600	ZNF genes & repeats	K562	blood
13	chr21:47217400-47217800	ZNF genes & repeats	Esophagus	oesophagus

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