Variant report

Variant	rs10155738
Chromosome Location	chr6:140764294-140764295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140762424..140765135-chr6:140858930..140861399,3	MCF-7	breast:
2	chr6:140763859..140766809-chr6:140781953..140784173,2	MCF-7	breast:
3	chr6:139689542..139691996-chr6:140762311..140765261,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs9484383	0.93[AFR][1000 genomes]
rs9484384	0.93[AFR][1000 genomes]
rs9495706	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495707	0.93[AFR][1000 genomes]
rs9495713	1.00[AFR][1000 genomes]
rs9495716	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	esv3377843	chr6:140749308-140767126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140759600-140767000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:140759800-140767000	Weak transcription	HMEC	breast
3	chr6:140761600-140766400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:140761800-140766000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:140762200-140766800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:140762400-140765200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:140762400-140766800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:140762600-140766400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:140762600-140766800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:140762600-140767200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:140762800-140766000	Weak transcription	Osteobl	bone
12	chr6:140762800-140766800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:140762800-140766800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:140762800-140767000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:140763000-140766400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:140763000-140766600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:140763000-140766800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:140763200-140766000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:140763200-140766200	Weak transcription	HSMM	muscle
20	chr6:140763200-140766600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:140763200-140767000	Weak transcription	HSMMtube	muscle
22	chr6:140763400-140766000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:140763600-140765000	Weak transcription	Fetal Heart	heart
24	chr6:140763600-140765800	Weak transcription	NHDF-Ad	bronchial
25	chr6:140763600-140766800	Weak transcription	NHLF	lung
26	chr6:140763800-140766800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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