Variant report

Variant	rs10155840
Chromosome Location	chr7:84405471-84405472
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10155838	1.00[AFR][1000 genomes]
rs10226259	1.00[AFR][1000 genomes]
rs10226299	1.00[AFR][1000 genomes]
rs10231229	0.89[AFR][1000 genomes]
rs10234675	0.98[AFR][1000 genomes]
rs10235779	0.95[YRI][hapmap];1.00[AFR][1000 genomes]
rs10236624	0.98[AFR][1000 genomes]
rs10240135	1.00[AFR][1000 genomes]
rs10244742	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10249541	1.00[AFR][1000 genomes]
rs10250789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10253977	0.96[AFR][1000 genomes]
rs10255631	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258050	0.89[AFR][1000 genomes]
rs10260013	0.90[AFR][1000 genomes]
rs10263930	0.89[AFR][1000 genomes]
rs10264994	0.89[AFR][1000 genomes]
rs10266193	0.95[AFR][1000 genomes]
rs10268436	0.85[AFR][1000 genomes]
rs10268834	1.00[AFR][1000 genomes]
rs10269265	1.00[AFR][1000 genomes]
rs10270396	0.96[AFR][1000 genomes]
rs10270546	0.98[AFR][1000 genomes]
rs10270873	1.00[AFR][1000 genomes]
rs10271786	0.95[AFR][1000 genomes]
rs10274807	0.98[AFR][1000 genomes]
rs10277365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10435465	0.83[JPT][hapmap]
rs10480534	0.95[AFR][1000 genomes]
rs11489548	1.00[ASN][1000 genomes]
rs12112932	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12113908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438201	0.96[AFR][1000 genomes]
rs13438429	0.96[AFR][1000 genomes]
rs1583140	0.98[AFR][1000 genomes]
rs1583141	0.98[AFR][1000 genomes]
rs1594376	0.89[AFR][1000 genomes]
rs1594377	0.89[AFR][1000 genomes]
rs28408003	1.00[AFR][1000 genomes]
rs28439673	0.98[AFR][1000 genomes]
rs28448564	1.00[AFR][1000 genomes]
rs28674967	0.96[AFR][1000 genomes]
rs28735889	1.00[AFR][1000 genomes]
rs28804974	0.98[AFR][1000 genomes]
rs28852818	0.98[AFR][1000 genomes]
rs4358754	1.00[AFR][1000 genomes]
rs4439049	0.85[AFR][1000 genomes]
rs4443588	0.83[YRI][hapmap];0.99[AFR][1000 genomes]
rs4604378	0.97[AFR][1000 genomes]
rs4620233	1.00[AFR][1000 genomes]
rs4728561	1.00[AFR][1000 genomes]
rs4728562	1.00[AFR][1000 genomes]
rs4732586	1.00[AFR][1000 genomes]
rs56238148	0.87[ASN][1000 genomes]
rs57588521	0.87[ASN][1000 genomes]
rs57745821	0.98[AFR][1000 genomes]
rs60041128	0.84[ASN][1000 genomes]
rs60911534	0.84[ASN][1000 genomes]
rs61320605	0.97[ASN][1000 genomes]
rs6943231	0.92[AFR][1000 genomes]
rs6947577	1.00[AFR][1000 genomes]
rs6947596	1.00[AFR][1000 genomes]
rs6949793	0.92[JPT][hapmap]
rs6957762	1.00[AFR][1000 genomes]
rs6961296	0.97[ASN][1000 genomes]
rs6968373	0.91[ASN][1000 genomes]
rs6975316	1.00[AFR][1000 genomes]
rs7781015	0.90[AFR][1000 genomes]
rs7793020	0.95[AFR][1000 genomes]
rs7796908	0.98[AFR][1000 genomes]
rs7797337	0.95[AFR][1000 genomes]
rs7797505	0.98[AFR][1000 genomes]
rs7798174	0.96[ASN][1000 genomes]
rs7804530	0.94[ASN][1000 genomes]
rs7805136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809245	0.98[AFR][1000 genomes]
rs7810914	0.98[AFR][1000 genomes]
rs891484	0.98[AFR][1000 genomes]
rs9640952	0.87[ASN][1000 genomes]
rs9642190	1.00[ASN][1000 genomes]
rs987014	0.90[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv888641	chr7:84168615-84453100	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv888643	chr7:84196258-84453100	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2762684	chr7:84218035-84444871	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv831047	chr7:84231938-84408081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84390400-84413800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:84404600-84409400	Weak transcription	K562	blood

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