Variant report

Variant	rs9642190
Chromosome Location	chr7:84393907-84393908
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84393484..84395921-chr7:84399174..84401421,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10155840	1.00[ASN][1000 genomes]
rs10250789	1.00[ASN][1000 genomes]
rs10255631	1.00[ASN][1000 genomes]
rs10277365	1.00[ASN][1000 genomes]
rs10435465	0.83[JPT][hapmap];1.00[EUR][1000 genomes]
rs11489548	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12056171	1.00[EUR][1000 genomes]
rs12112932	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12113908	1.00[ASN][1000 genomes]
rs1534573	1.00[EUR][1000 genomes]
rs2293575	1.00[EUR][1000 genomes]
rs2372506	1.00[EUR][1000 genomes]
rs55649642	1.00[EUR][1000 genomes]
rs56238148	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs57189679	1.00[EUR][1000 genomes]
rs57219677	0.88[AFR][1000 genomes]
rs57588521	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58175686	0.97[AFR][1000 genomes]
rs58333240	0.97[AFR][1000 genomes]
rs58363308	1.00[EUR][1000 genomes]
rs60041128	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60911534	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61320605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61538559	1.00[EUR][1000 genomes]
rs6949793	0.92[JPT][hapmap];0.87[AMR][1000 genomes]
rs6961296	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6968373	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73710918	1.00[EUR][1000 genomes]
rs73710921	1.00[EUR][1000 genomes]
rs73710928	1.00[EUR][1000 genomes]
rs73710930	1.00[EUR][1000 genomes]
rs73710931	1.00[EUR][1000 genomes]
rs73712949	1.00[EUR][1000 genomes]
rs73712958	1.00[EUR][1000 genomes]
rs73712961	1.00[EUR][1000 genomes]
rs7798174	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7801427	0.97[AFR][1000 genomes]
rs7801980	1.00[EUR][1000 genomes]
rs7804530	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7805136	1.00[ASN][1000 genomes]
rs7811798	1.00[EUR][1000 genomes]
rs9640952	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9640953	1.00[EUR][1000 genomes]
rs9642194	1.00[EUR][1000 genomes]
rs987014	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1031149	chr7:84144990-84404356	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv888641	chr7:84168615-84453100	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv888643	chr7:84196258-84453100	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2762684	chr7:84218035-84444871	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv831047	chr7:84231938-84408081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84390400-84413800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:84393400-84394000	Enhancers	HUES48 Cell Line	embryonic stem cell

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