Variant report

Variant	rs1534573
Chromosome Location	chr7:84555339-84555340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:84554524..84556792-chr7:84558035..84560018,2	K562	blood:
2	chr7:84544371..84546770-chr7:84555059..84558105,3	K562	blood:
3	chr7:84553263..84557308-chr7:84557996..84561050,4	K562	blood:
4	chr7:84548735..84551374-chr7:84555159..84557939,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12112932	1.00[ASW][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.93[LWK][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16887803	0.85[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap]
rs17159549	0.85[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17159556	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs17159573	0.85[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2190209	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2286188	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2293575	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2301939	0.84[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2372506	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57189679	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58363308	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60041128	1.00[EUR][1000 genomes]
rs60911534	1.00[EUR][1000 genomes]
rs61320605	1.00[EUR][1000 genomes]
rs6945304	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6961296	1.00[EUR][1000 genomes]
rs7793364	0.85[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap]
rs7794387	0.85[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801980	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7804530	1.00[EUR][1000 genomes]
rs7811798	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9640953	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9642190	1.00[EUR][1000 genomes]
rs9642194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9642197	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs987014	1.00[ASW][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.93[LWK][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1032638	chr7:84550206-84603392	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84542800-84557000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:84554000-84569200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:84554200-84556800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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