Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:69615187..69617972-chr7:84660995..84663157,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12112932	1.00[EUR][1000 genomes]
rs1534573	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16887803	0.98[ASN][1000 genomes]
rs17159549	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159556	1.00[ASN][1000 genomes]
rs17159573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2190209	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2286186	0.99[ASN][1000 genomes]
rs2293575	1.00[EUR][1000 genomes]
rs2301939	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372506	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57189679	1.00[EUR][1000 genomes]
rs58363308	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6945304	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7793364	1.00[ASN][1000 genomes]
rs7794387	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801980	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811798	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9640953	1.00[EUR][1000 genomes]
rs9642194	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9642197	0.99[ASN][1000 genomes]
rs987014	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84644600-84662600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:84655000-84673600	Weak transcription	Fetal Brain Male	brain
3	chr7:84655600-84666000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:84655600-84667800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:84656200-84694800	Weak transcription	Fetal Stomach	stomach
6	chr7:84660400-84661800	Enhancers	Fetal Lung	lung
7	chr7:84660600-84671200	Weak transcription	NHDF-Ad	bronchial
8	chr7:84661000-84662600	Weak transcription	Fetal Heart	heart

Quick Search: