Variant report

Variant	rs17159549
Chromosome Location	chr7:84648476-84648477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1016027	0.82[CHD][hapmap]
rs10231441	0.82[CHD][hapmap]
rs10281252	0.82[CHD][hapmap]
rs12112932	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs1534573	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16887803	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17159556	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17159573	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2040954	0.81[CHD][hapmap]
rs2040957	0.82[CHD][hapmap]
rs2158727	0.82[CHD][hapmap]
rs2190209	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2286185	0.82[CHD][hapmap]
rs2286186	0.99[ASN][1000 genomes]
rs2286188	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293575	1.00[EUR][1000 genomes]
rs2301939	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372506	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57189679	1.00[EUR][1000 genomes]
rs58363308	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60041128	1.00[EUR][1000 genomes]
rs60911534	1.00[EUR][1000 genomes]
rs6945304	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7780675	0.82[CHD][hapmap]
rs7793364	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7793649	0.82[CHD][hapmap]
rs7794387	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7800072	0.82[CHD][hapmap]
rs7801980	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811798	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9640953	1.00[EUR][1000 genomes]
rs9642194	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9642197	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs987014	0.86[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84634200-84654000	Weak transcription	Fetal Kidney	kidney
2	chr7:84643000-84654000	Weak transcription	HUVEC	blood vessel
3	chr7:84644600-84662600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:84646000-84649000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:84647400-84649800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:84647800-84649600	Strong transcription	Fetal Lung	lung
7	chr7:84647800-84649800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:84648000-84649800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:84648000-84649800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:84648000-84649800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:84648200-84649200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:84648200-84649200	Weak transcription	A549	lung
13	chr7:84648400-84648800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:84648400-84649600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:84648400-84649600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:84648400-84649800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr7:84648400-84649800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr7:84648400-84649800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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