Variant report

Variant	rs2040957
Chromosome Location	chr7:84626388-84626389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1016027	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10225455	0.96[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10231441	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10237102	0.98[EUR][1000 genomes]
rs10244898	0.95[EUR][1000 genomes]
rs10247311	0.88[EUR][1000 genomes]
rs10256889	0.94[EUR][1000 genomes]
rs10260131	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs10261725	0.96[CEU][hapmap];0.96[GIH][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs10264465	0.90[EUR][1000 genomes]
rs10267189	0.94[EUR][1000 genomes]
rs10268216	0.95[EUR][1000 genomes]
rs10271823	0.95[EUR][1000 genomes]
rs10277834	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs10281252	0.94[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10282482	0.91[EUR][1000 genomes]
rs10486845	0.92[CEU][hapmap];0.96[GIH][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes]
rs10486847	0.86[GIH][hapmap]
rs11760335	0.92[CEU][hapmap];0.98[EUR][1000 genomes]
rs11766179	0.92[EUR][1000 genomes]
rs11771699	0.86[EUR][1000 genomes]
rs11980498	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11980984	0.98[EUR][1000 genomes]
rs11982720	0.92[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12112643	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12113270	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12154971	0.98[EUR][1000 genomes]
rs12155292	0.98[EUR][1000 genomes]
rs12707691	0.96[EUR][1000 genomes]
rs12707692	0.96[EUR][1000 genomes]
rs12707693	0.95[EUR][1000 genomes]
rs12707695	0.96[EUR][1000 genomes]
rs12707696	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13230423	0.94[EUR][1000 genomes]
rs13231019	0.96[EUR][1000 genomes]
rs13231340	0.92[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13232515	0.95[EUR][1000 genomes]
rs13232613	0.95[EUR][1000 genomes]
rs13232789	0.92[EUR][1000 genomes]
rs13233871	0.96[EUR][1000 genomes]
rs13234489	0.92[CEU][hapmap];0.98[EUR][1000 genomes]
rs13234914	0.96[EUR][1000 genomes]
rs13240751	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs13242253	0.85[EUR][1000 genomes]
rs13244179	0.95[EUR][1000 genomes]
rs13307855	0.95[EUR][1000 genomes]
rs1468396	0.92[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1528621	0.95[EUR][1000 genomes]
rs1534565	0.85[EUR][1000 genomes]
rs1534566	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1534572	0.92[EUR][1000 genomes]
rs16887803	0.82[CHD][hapmap]
rs17159470	0.94[EUR][1000 genomes]
rs17159549	0.82[CHD][hapmap]
rs17558957	0.92[CEU][hapmap];0.98[EUR][1000 genomes]
rs17559084	0.92[CEU][hapmap];0.96[GIH][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes]
rs17559978	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17639510	0.98[EUR][1000 genomes]
rs17639600	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs1919282	0.96[EUR][1000 genomes]
rs2040954	0.84[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2103312	0.96[CEU][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs2141415	0.95[EUR][1000 genomes]
rs2158727	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2178236	0.95[EUR][1000 genomes]
rs2190211	0.92[CEU][hapmap];0.94[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2190213	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2214820	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2240393	0.92[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2286185	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2286189	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2286190	0.92[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2372503	0.94[EUR][1000 genomes]
rs2372510	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2372511	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28819164	0.94[EUR][1000 genomes]
rs34004921	0.96[EUR][1000 genomes]
rs34134012	0.95[EUR][1000 genomes]
rs34462522	0.95[EUR][1000 genomes]
rs34584772	0.95[EUR][1000 genomes]
rs34931062	0.98[EUR][1000 genomes]
rs34996468	0.96[EUR][1000 genomes]
rs35003658	0.98[EUR][1000 genomes]
rs35367762	0.85[EUR][1000 genomes]
rs35449238	0.95[EUR][1000 genomes]
rs35600623	0.96[EUR][1000 genomes]
rs35826544	0.96[EUR][1000 genomes]
rs35853835	0.96[EUR][1000 genomes]
rs35948002	0.84[EUR][1000 genomes]
rs36201011	0.83[EUR][1000 genomes]
rs4141132	0.92[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4560742	0.95[EUR][1000 genomes]
rs56039102	0.98[EUR][1000 genomes]
rs56227953	0.87[EUR][1000 genomes]
rs57531424	0.98[EUR][1000 genomes]
rs59006756	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62472060	0.90[EUR][1000 genomes]
rs62472062	0.91[EUR][1000 genomes]
rs62472078	0.94[EUR][1000 genomes]
rs62472081	0.94[EUR][1000 genomes]
rs62472087	0.95[EUR][1000 genomes]
rs62472088	0.95[EUR][1000 genomes]
rs62472110	0.98[EUR][1000 genomes]
rs62472151	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6468010	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6959903	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6962714	0.95[EUR][1000 genomes]
rs6965396	0.92[CEU][hapmap];0.98[EUR][1000 genomes]
rs713153	0.95[EUR][1000 genomes]
rs713154	0.96[EUR][1000 genomes]
rs71560707	0.95[EUR][1000 genomes]
rs7776699	0.95[EUR][1000 genomes]
rs7777682	0.95[EUR][1000 genomes]
rs7780675	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.85[LWK][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7788896	0.96[EUR][1000 genomes]
rs7790637	0.95[EUR][1000 genomes]
rs7790809	0.95[EUR][1000 genomes]
rs7793364	0.82[CHD][hapmap]
rs7793649	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7794144	0.95[EUR][1000 genomes]
rs7794619	0.95[EUR][1000 genomes]
rs7794920	0.96[EUR][1000 genomes]
rs7798487	0.93[EUR][1000 genomes]
rs7800072	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7801626	0.94[EUR][1000 genomes]
rs7803548	0.96[EUR][1000 genomes]
rs7806400	0.89[CEU][hapmap];0.96[GIH][hapmap];0.95[TSI][hapmap]
rs7807283	0.95[EUR][1000 genomes]
rs7809383	0.96[EUR][1000 genomes]
rs9642196	0.95[EUR][1000 genomes]
rs9942642	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84625800-84628600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:84625800-84630200	Weak transcription	Fetal Brain Male	brain
3	chr7:84626200-84628200	Weak transcription	Fetal Lung	lung

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