Variant report

Variant	rs17559978
Chromosome Location	chr7:84677860-84677861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs1016027	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10225455	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10231441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10237102	0.83[EUR][1000 genomes]
rs10244898	0.80[EUR][1000 genomes]
rs10260131	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10261725	0.96[CEU][hapmap];0.89[GIH][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs10268216	0.81[EUR][1000 genomes]
rs10271823	0.81[EUR][1000 genomes]
rs10277834	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10281252	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10486845	1.00[CEU][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs10486847	0.85[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs11760335	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11771699	0.94[EUR][1000 genomes]
rs11980498	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11980984	0.83[EUR][1000 genomes]
rs11982720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12112643	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12113270	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154971	0.83[EUR][1000 genomes]
rs12155292	0.83[EUR][1000 genomes]
rs12707691	0.82[EUR][1000 genomes]
rs12707692	0.82[EUR][1000 genomes]
rs12707693	0.80[EUR][1000 genomes]
rs12707695	0.82[EUR][1000 genomes]
rs12707696	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13231019	0.82[EUR][1000 genomes]
rs13231340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13232515	0.80[EUR][1000 genomes]
rs13232613	0.80[EUR][1000 genomes]
rs13233871	0.82[EUR][1000 genomes]
rs13234489	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs13234914	0.82[EUR][1000 genomes]
rs13240751	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs13242253	0.96[EUR][1000 genomes]
rs13244179	0.80[EUR][1000 genomes]
rs13307855	0.80[EUR][1000 genomes]
rs1468396	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1528621	0.80[EUR][1000 genomes]
rs17558957	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17559084	1.00[CEU][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs17639510	0.83[EUR][1000 genomes]
rs17639600	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1919282	0.82[EUR][1000 genomes]
rs2040954	0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2040957	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2103312	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs2141415	0.80[EUR][1000 genomes]
rs2158727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2178236	0.80[EUR][1000 genomes]
rs2190211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190213	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2214820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2240393	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2286185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2286189	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286190	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2372510	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372511	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34004921	0.82[EUR][1000 genomes]
rs34134012	0.81[EUR][1000 genomes]
rs34462522	0.80[EUR][1000 genomes]
rs34584772	0.80[EUR][1000 genomes]
rs34931062	0.83[EUR][1000 genomes]
rs34996468	0.82[EUR][1000 genomes]
rs35003658	0.83[EUR][1000 genomes]
rs35367762	0.96[EUR][1000 genomes]
rs35449238	0.80[EUR][1000 genomes]
rs35600623	0.82[EUR][1000 genomes]
rs35826544	0.84[EUR][1000 genomes]
rs35853835	0.82[EUR][1000 genomes]
rs35948002	0.94[EUR][1000 genomes]
rs4141132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4560742	0.80[EUR][1000 genomes]
rs56039102	0.83[EUR][1000 genomes]
rs57531424	0.83[EUR][1000 genomes]
rs59006756	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62472078	0.80[EUR][1000 genomes]
rs62472087	0.80[EUR][1000 genomes]
rs62472088	0.80[EUR][1000 genomes]
rs62472110	0.83[EUR][1000 genomes]
rs62472151	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6468010	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6959903	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6962714	0.83[EUR][1000 genomes]
rs6965396	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs713153	0.80[EUR][1000 genomes]
rs713154	0.82[EUR][1000 genomes]
rs71560707	0.80[EUR][1000 genomes]
rs7776699	0.80[EUR][1000 genomes]
rs7777682	0.80[EUR][1000 genomes]
rs7780675	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7788896	0.82[EUR][1000 genomes]
rs7790637	0.80[EUR][1000 genomes]
rs7790809	0.80[EUR][1000 genomes]
rs7793649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7794144	0.80[EUR][1000 genomes]
rs7794619	0.80[EUR][1000 genomes]
rs7794920	0.82[EUR][1000 genomes]
rs7800072	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7803548	0.82[EUR][1000 genomes]
rs7806400	0.96[CEU][hapmap];0.89[GIH][hapmap];0.82[TSI][hapmap]
rs7807283	0.80[EUR][1000 genomes]
rs7809383	0.82[EUR][1000 genomes]
rs9642196	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84656200-84694800	Weak transcription	Fetal Stomach	stomach
2	chr7:84664600-84680200	Weak transcription	Fetal Lung	lung
3	chr7:84671400-84680200	Weak transcription	Fetal Kidney	kidney
4	chr7:84676200-84678800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:84676400-84678600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:84676400-84678800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:84676400-84678800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:84676400-84679000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:84676400-84683600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:84676400-84694800	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:84676800-84679000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:84677800-84678000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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