Variant report

Variant	rs2190211
Chromosome Location	chr7:84682669-84682670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs1016027	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10225455	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10231441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10237102	0.84[EUR][1000 genomes]
rs10244898	0.80[EUR][1000 genomes]
rs10260131	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10261725	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs10268216	0.81[EUR][1000 genomes]
rs10271823	0.81[EUR][1000 genomes]
rs10277834	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10281252	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10486845	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10486847	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs11760335	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11771699	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11980498	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11980984	0.84[EUR][1000 genomes]
rs11982720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12112643	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12113270	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154971	0.84[EUR][1000 genomes]
rs12155292	0.84[EUR][1000 genomes]
rs12707691	0.83[EUR][1000 genomes]
rs12707692	0.83[EUR][1000 genomes]
rs12707693	0.80[EUR][1000 genomes]
rs12707695	0.83[EUR][1000 genomes]
rs12707696	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13231019	0.83[EUR][1000 genomes]
rs13231340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13232515	0.80[EUR][1000 genomes]
rs13232613	0.80[EUR][1000 genomes]
rs13233871	0.83[EUR][1000 genomes]
rs13234489	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13234914	0.83[EUR][1000 genomes]
rs13240751	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13242253	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13244179	0.80[EUR][1000 genomes]
rs13307855	0.82[EUR][1000 genomes]
rs1468396	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1528621	0.80[EUR][1000 genomes]
rs1534566	0.87[AMR][1000 genomes]
rs17558957	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17559084	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17559978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17639510	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17639600	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1919282	0.83[EUR][1000 genomes]
rs2040954	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2040957	0.92[CEU][hapmap];0.94[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2103312	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs2141415	0.80[EUR][1000 genomes]
rs2158727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2178236	0.80[EUR][1000 genomes]
rs2190213	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2214820	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2240393	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2286185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2286189	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2372510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34004921	0.83[EUR][1000 genomes]
rs34134012	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34462522	0.80[EUR][1000 genomes]
rs34584772	0.80[EUR][1000 genomes]
rs34931062	0.84[EUR][1000 genomes]
rs34996468	0.83[EUR][1000 genomes]
rs35003658	0.84[EUR][1000 genomes]
rs35367762	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35449238	0.80[EUR][1000 genomes]
rs35600623	0.83[EUR][1000 genomes]
rs35826544	0.83[EUR][1000 genomes]
rs35853835	0.83[EUR][1000 genomes]
rs35948002	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4141132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4560742	0.80[EUR][1000 genomes]
rs56039102	0.84[EUR][1000 genomes]
rs57531424	0.84[EUR][1000 genomes]
rs59006756	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62472078	0.80[EUR][1000 genomes]
rs62472087	0.80[EUR][1000 genomes]
rs62472088	0.80[EUR][1000 genomes]
rs62472110	0.84[EUR][1000 genomes]
rs62472151	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6468010	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6959903	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6962714	0.82[EUR][1000 genomes]
rs6965396	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs713153	0.80[EUR][1000 genomes]
rs713154	0.83[EUR][1000 genomes]
rs71560707	0.80[EUR][1000 genomes]
rs7776699	0.80[EUR][1000 genomes]
rs7777682	0.80[EUR][1000 genomes]
rs7780675	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7788896	0.83[EUR][1000 genomes]
rs7790637	0.80[EUR][1000 genomes]
rs7790809	0.80[EUR][1000 genomes]
rs7793649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7794144	0.80[EUR][1000 genomes]
rs7794619	0.80[EUR][1000 genomes]
rs7794920	0.83[EUR][1000 genomes]
rs7800072	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7803548	0.83[EUR][1000 genomes]
rs7806400	0.96[CEU][hapmap]
rs7807283	0.80[EUR][1000 genomes]
rs7809383	0.83[EUR][1000 genomes]
rs9642196	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84656200-84694800	Weak transcription	Fetal Stomach	stomach
2	chr7:84676400-84683600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:84676400-84694800	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:84678400-84689800	Weak transcription	Aorta	Aorta
5	chr7:84679000-84683800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:84679200-84692600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:84679400-84683600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:84680400-84694600	Weak transcription	Fetal Kidney	kidney
9	chr7:84681000-84684600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:84681600-84684800	Strong transcription	Fetal Lung	lung
11	chr7:84682400-84683000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:84682400-84684400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:84682400-84684800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:84682400-84685600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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